Factsheet for GSMUA_Achr9P26440_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plasma membrane 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr1P22980_001
GSMUA_Achr1P22990_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66560.1	GSMUA_Achr10P...	AT1G03140.1	21798944
AT5G66560.1	GSMUA_Achr1P22980_001	AT1G03140.1	21798944
AT5G66560.1	GSMUA_Achr1P22990_001	AT1G03140.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P04840_001	Banana	cytosol	61.17	60.54
VIT_00s0207g00230.t01	Wine grape	cytosol	61.68	56.54
CDY45241	Canola	cytosol	54.81	53.34
Solyc02g090070.2.1	Tomato	nucleus	58.59	52.38
KRH08351	Soybean	cytosol	57.9	52.01
PGSC0003DMT400026008	Potato	cytosol	58.08	51.29
KRH28552	Soybean	cytosol	51.89	51.01
CDX77951	Canola	cytosol	47.77	50.73
CDY30765	Canola	cytosol	54.98	50.47
CDX73781	Canola	cytosol	47.25	50.46
KRH69999	Soybean	endoplasmic reticulum	57.9	49.56
Bra036858.1-P	Field mustard	cytosol	47.77	48.43
AT3G50840.1	Thale cress	cytosol	47.25	48.33
Bra012082.1-P	Field mustard	cytosol	55.5	48.28
AT5G66560.1	Thale cress	cytosol	55.15	48.05
KRH76914	Soybean	cytosol	41.07	46.86
GSMUA_Achr6P30010_001	Banana	cytosol	43.81	46.53
GSMUA_Achr5P00550_001	Banana	cytosol	47.94	44.36
GSMUA_Achr5P02440_001	Banana	cytosol	43.47	44.15
GSMUA_Achr9P26110_001	Banana	cytosol	45.7	43.89
GSMUA_Achr2P02890_001	Banana	cytosol	39.86	41.13
GSMUA_Achr4P31620_001	Banana	cytosol	42.1	41.04
GSMUA_AchrUn_...	Banana	cytosol	28.52	39.06
GSMUA_Achr9P19480_001	Banana	extracellular, plasma membrane	33.85	39.01
GSMUA_Achr6P27970_001	Banana	cytosol	32.47	36.56
GSMUA_Achr4P01950_001	Banana	cytosol	25.6	36.52
GSMUA_Achr10P...	Banana	cytosol	34.02	35.8
GSMUA_Achr7P21950_001	Banana	plastid	34.36	35.52
GSMUA_Achr3P20380_001	Banana	cytosol	34.88	35.3
GSMUA_Achr8P30170_001	Banana	plastid	33.16	34.59
GSMUA_Achr1P11260_001	Banana	plastid	33.33	33.86
GSMUA_Achr5P01710_001	Banana	cytosol	33.16	33.22
GSMUA_Achr4P10900_001	Banana	cytosol	30.41	31.78
GSMUA_Achr7P26250_001	Banana	cytosol	32.99	30.77
GSMUA_Achr11P...	Banana	cytosol, plastid	30.41	30.57
GSMUA_Achr10P...	Banana	cytosol	29.55	30.55
GSMUA_Achr3P04740_001	Banana	cytosol	30.93	30.51
GSMUA_Achr10P...	Banana	cytosol	29.73	30.4
GSMUA_Achr7P26300_001	Banana	cytosol	30.76	30.24
GSMUA_Achr5P29690_001	Banana	cytosol, plastid	30.93	30.0
GSMUA_Achr1P21440_001	Banana	cytosol	30.93	29.61
GSMUA_Achr8P16390_001	Banana	cytosol	26.46	29.5
GSMUA_Achr2P13430_001	Banana	cytosol	31.62	27.42
GSMUA_Achr3P25690_001	Banana	nucleus	54.98	26.8
GSMUA_Achr3P12020_001	Banana	cytosol	24.05	25.64
GSMUA_Achr3P14590_001	Banana	cytosol	24.4	24.78

Protein Annotations

Gene3D:3.30.710.10	MapMan:35.1	InterPro:BTB/POZ_dom	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr9G26440_001	EnsemblPlants:GSMUA_Achr9P26440_001	EnsemblPlants:GSMUA_Achr9T26440_001	InterPro:IPR000210	InterPro:IPR027356
UniProt:M0U3Q1	InterPro:NPH3_dom	PFAM:PF00651	PFAM:PF03000	PFscan:PS50097	PFscan:PS51649
PANTHER:PTHR32370	PANTHER:PTHR32370:SF8	InterPro:SKP1/BTB/POZ_sf	SMART:SM00225	SUPFAM:SSF54695	UniParc:UPI0002954247
SEG:seg	:	:	:	:	:

Description

Putative BTB/POZ domain-containing protein At1g30440 [Source:GMGC_GENE;Acc:GSMUA_Achr9G26440_001]

Coordinates

chr9:-:30861821..30864057

Molecular Weight (calculated)

64006.8 Da

IEP (calculated)

5.223

GRAVY (calculated)

-0.350

Length

582 amino acids

Sequence
(BLAST)

001: MAAEKSSSRG QAWFCTTGLP TDIVIEVGEM SFHLHKFPLM SKSRKLHQLI TEIEQKNGAD GEEEEIEEVE EDFHHIPLPD FPGGAEIFEA AAKFCYGVKI
101: EITAWNAAAL RCAAEYLEMT EEFAEENLVS RTERFLAQSV LRSPRESVKA LKSCEALLPM AEDLGLVQRC LQSAAAALWN GIDTGIRRKN GLRSTAASAA
201: AAVAVDSWFE DLAALSLPFY KRVISAMRAK DLNADVIEGS LISYAKRSIP GLSRSNRHHN ASTAAAASSG PLPSEAEQRE LLETVITNLP QSKKKSSSSS
301: SGLVTTRFLF GLLRTANILR ASEASRTALE RRIASQLEHA TLDDLLMPSY SYLVETLYDV DCDADDDGDG EEEAGSSLCT DKNKLLVVGK LVDTYLSEIA
401: SDANLKPDKF CNLALSLPDH ARMFDDGLYR SVDVYLKAHP RITEEEKERV CGVMDCQKLT LEACTHAAQN ERLPLRAVVQ DEEEEEDEAA EGERREGGGW
501: RGAAAIRENQ VLRLDMDSMR SRVQGLEREC SRMRKAIERM DRGAVAAAAG GGRGKLARRF GCKFGTQVCV SHHRTVVAPR KS

Best Arabidopsis Sequence Match ( AT5G66560.1 )
(BLAST)

001: MASEKSTSKG QAWFCTTGLP SDIEIEVDDM TFHLHKFPLM SKSRKLHRLI TEQETRSSSS MALITVIDPK VEETDKKGKG HEIEDDKEEE EVEEQEIEEN
101: GYPHIKLEDF PGSSESFEMV AKFCYGVKMD LSASTVVPLR CAAEHLEMTE EYSPDNLISK TERFLSHSVY KSLRESIKAL KACESVSPLA GSLGITEQCI
201: DSIVSRASSA DPSLFGWPVN DGGGRGNISA TDLQLIPGGA AKSRKKPSRD SNMELWFEDL TQLSLPIFKT VILSMRSGDL SSDIIESCLI CYAKKHIPGI
301: LRSNRKPPSS SSTAVSENEQ RELLETITSN LPLDKSSISS TTRFLFGLLR TAIILNAAEI CRDLLERKIG SQLERATLDD LLVPSYSYLN ETLYDVDLVE
401: RILGHFLDTL EQSNTAIVEV DGKSPSLMLV GKLIDGFLAE IASDANLKSD KFYNLAISLP DQARLYDDGL YRAVDVYLKA HPWVSEAERE KICGVMDCQK
501: LTLEACTHAA QNERLPLRAV VQVLFFEQLQ LRHAIAGTLL AAQSPSTSQS TEPRPSAAIR NLTITEEDGD EAEGERQVDA GKWKKTVREN QVLRLDMDTM
601: RTRVHRLERE CSNMKKVIAK IDKEGSSPAT TTDRPRSWSI TKKFGCKFKT QVCDSHEATM VDHRSRRS

Arabidopsis Description

BTB/POZ domain-containing protein At5g66560 [Source:UniProtKB/Swiss-Prot;Acc:Q94A73]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.