Factsheet for GSMUA_Achr1P22980_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03140.1	GSMUA_AchrUn_...	AT4G32190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d025877_P001	Maize	nucleus	48.62	43.31
GSMUA_Achr10P...	Banana	nucleus	57.31	38.26
KRG95545	Soybean	nucleus	57.31	35.28
KRH67222	Soybean	nucleus	57.31	35.11
Zm00001d025878_P001	Maize	nucleus	49.8	32.56
VIT_07s0151g01010.t01	Wine grape	nucleus	52.96	32.52
Solyc09g065280.2.1	Tomato	nucleus	51.78	31.72
PGSC0003DMT400049840	Potato	nucleus	50.99	31.23
Bra032556.1-P	Field mustard	nucleus	49.41	30.12
AT1G03140.1	Thale cress	nucleus	49.8	30.0
CDY37439	Canola	nucleus	47.43	29.93
Os07t0571900-01	Rice	nucleus	51.78	29.91
CDY15450	Canola	nucleus	49.8	29.65
CDY32499	Canola	nucleus	47.43	29.63
Bra030520.1-P	Field mustard	nucleus	49.41	29.41
PGSC0003DMT400027500	Potato	nucleus	39.92	28.86
Zm00001d021867_P001	Maize	nucleus	49.41	28.47
Zm00001d021864_P001	Maize	nucleus	49.41	28.41
EER99582	Sorghum	nucleus	49.01	28.31
Solyc07g052190.1.1	Tomato	cytosol	37.55	28.19
TraesCS2A01G197100.1	Wheat	nucleus	47.04	27.61
TraesCS2B01G224600.1	Wheat	nucleus	47.04	27.61
TraesCS2D01G205000.1	Wheat	nucleus	47.04	26.5
PGSC0003DMT400027505	Potato	cytosol	38.74	26.2
HORVU2Hr1G038180.2	Barley	mitochondrion	43.87	25.23
AT1G54590.1	Thale cress	nucleus	30.83	21.61
Solyc07g052050.1.1	Tomato	mitochondrion	16.21	18.39
Zm00001d025884_P001	Maize	nucleus	12.65	14.35
GSMUA_Achr1P22990_001	Banana	cytosol	1.58	3.45
Bra041171.1-P	Field mustard	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:GSMUA_Achr1P22980_001	EnsemblPlants:GSMUA_Achr1T22980_001	EnsemblPlantsGene:GSMUA_Achr1G22980_001	Gene3D:1.10.720.150	InterPro:IPR036285	InterPro:PRP4-like
InterPro:PRP4-like_sf	ncoils:Coil	PANTHER:PTHR13007	PANTHER:PTHR13007:SF20	PFAM:PF08799	SEG:seg
SMART:SM00500	SUPFAM:SSF158230	SUPFAM:SSF47938	UniParc:UPI000296E08C	UniProt:M0S2A6	MapMan:35.2

Description

Putative Pre-mRNA-splicing factor 18 [Source:GMGC_GENE;Acc:GSMUA_Achr1G22980_001]

Coordinates

chr1:+:17267379..17268212

Molecular Weight (calculated)

29273.2 Da

IEP (calculated)

8.303

GRAVY (calculated)

-0.747

Length

253 amino acids

Sequence
(BLAST)

001: MDLVKRELQK KRQMLQADFG GRKLLRRSEI EQKEIQRLRQ QEQRHLQSKS HDSIPTSSYE KPSKSLLSER GNDDAAAGLP RDEVVRRLRI LKQPATLFGE
101: DDAARFRRLQ AVIESGPIEV EEEMADGQTN DFLRDIYELR RRQRTGILPE RALAKREGAA DGVDTDLKRL KGDFEELCDE DKILVFFSKL LSEWGQEVEE
201: MLEAEKRTAK GKFVAATFNQ CARYLKPMFR MCGKKVCSYS LDLLELNPGM YLT

Best Arabidopsis Sequence Match ( AT1G03140.1 )
(BLAST)

001: MDLLREEILK KRKSLAEESG GKKFFKRSEI EQKKIQKLRE EERREHELKA QRRAAAAASG GDGKSSGSAP GSSNAATSAS SKSSASDAAA IADSKALTDE
101: NLILPRQEVI RRLRFLKQPM TLFGEDDQSR LDRLKYVLKE GLFEVDSDMT EGQTNDFLRD IAELKKRQKS GMMGDRKRKS RDERGRDEGD RGETREDELS
201: GGESSDVDAD KDMKRLKANF EDLCDEDKIL VFYKKLLIEW KQELDAMENT ERRTAKGKQM VATFKQCARY LVPLFNLCRK KGLPADIRQA LMVMVNHCIK
301: RDYLAAMDHY IKLAIGNAPW PIGVTMVGIH ERSAREKIYT NSVAHIMNDE TTRKYLQSVK RLMTFCQRRY PTMPSKAVEF NSLANGSDLQ SLLAEERFFG
401: GNREQVSEER LRLMPSQSES

Arabidopsis Description

F10O3.3 protein [Source:UniProtKB/TrEMBL;Acc:Q9SA55]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.