Factsheet for TraesCS2D01G205000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G180500.1
TraesCS6D01G164600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03140.1	TraesCS6A01G180500.1	AT4G32190.1	21798944
AT1G03140.1	TraesCS6D01G164600.1	AT4G32190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G197100.1	Wheat	nucleus	95.55	99.54
TraesCS2B01G224600.1	Wheat	nucleus	94.65	98.61
HORVU2Hr1G038180.2	Barley	mitochondrion	87.97	89.77
Os07t0571900-01	Rice	nucleus	80.4	82.42
Zm00001d025884_P001	Maize	nucleus	39.87	80.27
EER99582	Sorghum	nucleus	77.51	79.45
Zm00001d021867_P001	Maize	nucleus	77.28	79.04
Zm00001d025878_P001	Maize	nucleus	67.93	78.81
Zm00001d021864_P001	Maize	nucleus	76.39	77.95
Bra041171.1-P	Field mustard	nucleus	11.58	70.27
Zm00001d025877_P001	Maize	nucleus	43.65	69.01
GSMUA_Achr10P...	Banana	nucleus	55.68	65.96
KRH67222	Soybean	nucleus	57.91	62.95
KRG95545	Soybean	nucleus	56.35	61.56
Solyc09g065280.2.1	Tomato	nucleus	56.35	61.26
VIT_07s0151g01010.t01	Wine grape	nucleus	55.9	60.92
PGSC0003DMT400049840	Potato	nucleus	55.9	60.77
AT1G03140.1	Thale cress	nucleus	54.12	57.86
CDY37439	Canola	nucleus	50.78	56.86
PGSC0003DMT400027500	Potato	nucleus	44.32	56.86
Bra032556.1-P	Field mustard	nucleus	52.34	56.63
CDY32499	Canola	nucleus	50.78	56.3
CDY15450	Canola	nucleus	53.23	56.24
Bra030520.1-P	Field mustard	nucleus	52.78	55.76
Solyc07g052050.1.1	Tomato	mitochondrion	26.95	54.26
TraesCS4D01G035800.1	Wheat	nucleus	45.66	53.39
PGSC0003DMT400027505	Potato	cytosol	43.65	52.41
Solyc07g052190.1.1	Tomato	cytosol	38.98	51.93
AT1G54590.1	Thale cress	nucleus	38.98	48.48
GSMUA_Achr1P22980_001	Banana	nucleus	26.5	47.04

Protein Annotations

Gene3D:1.10.720.150	Gene3D:1.20.940.10	MapMan:35.2	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005681	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380
GO:GO:0009987	InterPro:IPR036285	PFAM:PF02840	PFAM:PF08799	InterPro:PRP4-like	InterPro:PRP4-like_sf
PANTHER:PTHR13007	PANTHER:PTHR13007:SF23	InterPro:Prp18	SMART:SM00500	SUPFAM:SSF158230	SUPFAM:SSF47938
EnsemblPlantsGene:TraesCS2D01G205000	EnsemblPlants:TraesCS2D01G205000.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2D:+:157014879..157018410

Molecular Weight (calculated)

49947.6 Da

IEP (calculated)

8.102

GRAVY (calculated)

-0.659

Length

449 amino acids

Sequence
(BLAST)

001: MDLLRKELEK KRKAATADFG GKNFVRRSEL EDKQLQKRRQ IPAKVPSVPT PNSSAASDPT NSNADPAQAG GGNPNPSSSA AAASVPPALA GKKATPEDTL
101: HSEERRIDEL VLPRNEVMRR LRVLREPVTL FGEDDADRLD RLKLVLKSGA IDDIDDLEMT EGQTNDFLRD MIELRMRQKA GRDAYGKGKG KRVGAGDGGE
201: GGALGDDVDE GDGDARRSGD DADADKDSKR MKTKFEELCD EDKILVFFKR LLNEWNQELD DMTELEKRSA KGKSMFATFK QCARYLSPLF EFCRKKVLPD
301: DIRKALLFIV DCCMKRDYLQ AMDQYIKLAI GNAPWPIGVT MVGIHERSAR EKIYTNSVAH IMNDETTRKY LQSIKRLMTL CQRRYPALPS KSVEFNSLAN
401: GSDLQALLSE EKNPTKGPSE DRLRLMPASK DLHVLPAAVS SVSLVLNSG

Best Arabidopsis Sequence Match ( AT1G03140.1 )
(BLAST)

001: MDLLREEILK KRKSLAEESG GKKFFKRSEI EQKKIQKLRE EERREHELKA QRRAAAAASG GDGKSSGSAP GSSNAATSAS SKSSASDAAA IADSKALTDE
101: NLILPRQEVI RRLRFLKQPM TLFGEDDQSR LDRLKYVLKE GLFEVDSDMT EGQTNDFLRD IAELKKRQKS GMMGDRKRKS RDERGRDEGD RGETREDELS
201: GGESSDVDAD KDMKRLKANF EDLCDEDKIL VFYKKLLIEW KQELDAMENT ERRTAKGKQM VATFKQCARY LVPLFNLCRK KGLPADIRQA LMVMVNHCIK
301: RDYLAAMDHY IKLAIGNAPW PIGVTMVGIH ERSAREKIYT NSVAHIMNDE TTRKYLQSVK RLMTFCQRRY PTMPSKAVEF NSLANGSDLQ SLLAEERFFG
401: GNREQVSEER LRLMPSQSES

Arabidopsis Description

F10O3.3 protein [Source:UniProtKB/TrEMBL;Acc:Q9SA55]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.