Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d053726_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G03140.1 | Zm00001d053726_P001 | AT4G32190.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra041171.1-P | Field mustard | nucleus | 22.42 | 67.57 |
| Zm00001d025878_P001 | Maize | nucleus | 92.38 | 53.23 |
| Zm00001d006637_P001 | Maize | cytosol | 37.22 | 50.0 |
| Zm00001d021867_P001 | Maize | nucleus | 87.0 | 44.19 |
| Zm00001d021864_P001 | Maize | nucleus | 87.0 | 44.09 |
| EER99582 | Sorghum | nucleus | 86.1 | 43.84 |
| TraesCS2A01G197100.1 | Wheat | nucleus | 80.27 | 41.53 |
| TraesCS2B01G224600.1 | Wheat | nucleus | 80.27 | 41.53 |
| Os07t0571900-01 | Rice | nucleus | 81.17 | 41.32 |
| HORVU2Hr1G038180.2 | Barley | mitochondrion | 80.27 | 40.68 |
| TraesCS2D01G205000.1 | Wheat | nucleus | 80.27 | 39.87 |
| GSMUA_Achr10P... | Banana | nucleus | 66.82 | 39.31 |
| Solyc07g052050.1.1 | Tomato | mitochondrion | 39.01 | 39.01 |
| KRG95545 | Soybean | nucleus | 70.4 | 38.2 |
| KRH67222 | Soybean | nucleus | 70.4 | 38.01 |
| PGSC0003DMT400049840 | Potato | nucleus | 69.51 | 37.53 |
| VIT_07s0151g01010.t01 | Wine grape | nucleus | 69.06 | 37.38 |
| Solyc09g065280.2.1 | Tomato | nucleus | 69.06 | 37.29 |
| PGSC0003DMT400027500 | Potato | nucleus | 57.4 | 36.57 |
| AT1G03140.1 | Thale cress | nucleus | 64.13 | 34.05 |
| AT1G54590.1 | Thale cress | nucleus | 54.26 | 33.52 |
| Bra032556.1-P | Field mustard | nucleus | 62.33 | 33.49 |
| CDY37439 | Canola | nucleus | 59.64 | 33.17 |
| PGSC0003DMT400027505 | Potato | cytosol | 55.61 | 33.16 |
| CDY32499 | Canola | nucleus | 60.09 | 33.09 |
| CDY15450 | Canola | nucleus | 62.33 | 32.71 |
| Bra030520.1-P | Field mustard | nucleus | 62.33 | 32.71 |
| Zm00001d013489_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 54.26 | 32.18 |
| Solyc07g052190.1.1 | Tomato | cytosol | 47.53 | 31.45 |
| Zm00001d025877_P001 | Maize | nucleus | 35.87 | 28.17 |
| GSMUA_Achr1P22980_001 | Banana | nucleus | 14.35 | 12.65 |
Protein Annotations
| Gene3D:1.20.940.10 | MapMan:35.2 | UniProt:A0A1D6JAK9 | ProteinID:AQK44932.1 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008380 | GO:GO:0009987 | PFAM:PF02840 | PANTHER:PTHR13007 | PANTHER:PTHR13007:SF23 | InterPro:Prp18 |
| SUPFAM:SSF47938 | UniParc:UPI0008456E31 | EnsemblPlantsGene:Zm00001d025884 | EnsemblPlants:Zm00001d025884_P001 | EnsemblPlants:Zm00001d025884_T001 | SEG:seg |
Description
splicing factor Prp18 family protein
Coordinates
chr10:-:132881662..132883539
Molecular Weight (calculated)
24902.9 Da
IEP (calculated)
9.064
GRAVY (calculated)
-0.556
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGIINDIDM IEGQTNDFLR DMIEMRKRQK AGRDTYAKGK SKRVDDGGAA GASADDGDAK GSGDDANADK DSKRMRTNPL FEFCRKKVLP DDIRRALLVI
101: VECCMKRDYL AAMDQYIKLA IGNAPWPIGV TMVGIHERSA REKIYTNSVA HIMNDETTRK YLQLIKRLMT LSQRRYPALP SKSVEFNSLA NGSDLQALLS
201: EENGSAKASE ERLRLMPAYA FAN
101: VECCMKRDYL AAMDQYIKLA IGNAPWPIGV TMVGIHERSA REKIYTNSVA HIMNDETTRK YLQLIKRLMT LSQRRYPALP SKSVEFNSLA NGSDLQALLS
201: EENGSAKASE ERLRLMPAYA FAN
001: MDLLREEILK KRKSLAEESG GKKFFKRSEI EQKKIQKLRE EERREHELKA QRRAAAAASG GDGKSSGSAP GSSNAATSAS SKSSASDAAA IADSKALTDE
101: NLILPRQEVI RRLRFLKQPM TLFGEDDQSR LDRLKYVLKE GLFEVDSDMT EGQTNDFLRD IAELKKRQKS GMMGDRKRKS RDERGRDEGD RGETREDELS
201: GGESSDVDAD KDMKRLKANF EDLCDEDKIL VFYKKLLIEW KQELDAMENT ERRTAKGKQM VATFKQCARY LVPLFNLCRK KGLPADIRQA LMVMVNHCIK
301: RDYLAAMDHY IKLAIGNAPW PIGVTMVGIH ERSAREKIYT NSVAHIMNDE TTRKYLQSVK RLMTFCQRRY PTMPSKAVEF NSLANGSDLQ SLLAEERFFG
401: GNREQVSEER LRLMPSQSES
101: NLILPRQEVI RRLRFLKQPM TLFGEDDQSR LDRLKYVLKE GLFEVDSDMT EGQTNDFLRD IAELKKRQKS GMMGDRKRKS RDERGRDEGD RGETREDELS
201: GGESSDVDAD KDMKRLKANF EDLCDEDKIL VFYKKLLIEW KQELDAMENT ERRTAKGKQM VATFKQCARY LVPLFNLCRK KGLPADIRQA LMVMVNHCIK
301: RDYLAAMDHY IKLAIGNAPW PIGVTMVGIH ERSAREKIYT NSVAHIMNDE TTRKYLQSVK RLMTFCQRRY PTMPSKAVEF NSLANGSDLQ SLLAEERFFG
401: GNREQVSEER LRLMPSQSES
Arabidopsis Description
F10O3.3 protein [Source:UniProtKB/TrEMBL;Acc:Q9SA55]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.