Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra041171.1-P | Field mustard | nucleus | 17.41 | 100.0 |
| Bra030520.1-P | Field mustard | nucleus | 99.29 | 99.29 |
| CDY32499 | Canola | nucleus | 87.29 | 91.6 |
| CDY37439 | Canola | nucleus | 86.35 | 91.52 |
| AT1G03140.1 | Thale cress | nucleus | 86.12 | 87.14 |
| GSMUA_Achr1P22990_001 | Banana | cytosol | 22.35 | 81.9 |
| KRG95545 | Soybean | nucleus | 68.94 | 71.29 |
| VIT_07s0151g01010.t01 | Wine grape | nucleus | 68.71 | 70.87 |
| KRH67222 | Soybean | nucleus | 68.71 | 70.7 |
| PGSC0003DMT400049840 | Potato | nucleus | 67.29 | 69.25 |
| Solyc09g065280.2.1 | Tomato | nucleus | 67.06 | 69.01 |
| GSMUA_Achr10P... | Banana | nucleus | 59.53 | 66.75 |
| Zm00001d025884_P001 | Maize | nucleus | 32.71 | 62.33 |
| Zm00001d025878_P001 | Maize | nucleus | 56.0 | 61.5 |
| PGSC0003DMT400027500 | Potato | nucleus | 50.59 | 61.43 |
| PGSC0003DMT400027505 | Potato | cytosol | 52.0 | 59.09 |
| Os07t0571900-01 | Rice | nucleus | 60.71 | 58.9 |
| AT1G54590.1 | Thale cress | nucleus | 49.88 | 58.73 |
| EER99582 | Sorghum | nucleus | 59.76 | 57.99 |
| Zm00001d021867_P001 | Maize | nucleus | 59.53 | 57.63 |
| Zm00001d021864_P001 | Maize | nucleus | 59.53 | 57.5 |
| Solyc07g052050.1.1 | Tomato | mitochondrion | 29.41 | 56.05 |
| TraesCS2B01G224600.1 | Wheat | nucleus | 56.47 | 55.68 |
| Solyc07g052190.1.1 | Tomato | cytosol | 44.0 | 55.49 |
| KXG37778 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 48.94 | 55.47 |
| TraesCS2A01G197100.1 | Wheat | nucleus | 56.0 | 55.22 |
| TraesCS4A01G275400.1 | Wheat | cytosol | 49.65 | 54.66 |
| Zm00001d013489_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 48.24 | 54.52 |
| TraesCS4D01G035800.1 | Wheat | nucleus | 49.18 | 54.43 |
| TraesCS4B01G038900.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 48.71 | 54.19 |
| TraesCS2D01G205000.1 | Wheat | nucleus | 56.24 | 53.23 |
| HORVU2Hr1G038180.2 | Barley | mitochondrion | 54.12 | 52.27 |
| GSMUA_Achr1P22980_001 | Banana | nucleus | 29.65 | 49.8 |
| Zm00001d025877_P001 | Maize | nucleus | 33.18 | 49.65 |
| Os03t0701100-01 | Rice | cytosol, nucleus, plastid | 27.06 | 36.16 |
| HORVU4Hr1G006120.1 | Barley | mitochondrion | 19.06 | 21.32 |
Protein Annotations
| Gene3D:1.10.720.150 | Gene3D:1.20.940.10 | MapMan:35.2 | GO:A0A078FLZ3 | UniProt:A0A078FLZ3 | EnsemblPlants:CDY15450 |
| ProteinID:CDY15450 | ProteinID:CDY15450.1 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005681 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 |
| GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00089618001 | InterPro:IPR036285 | PFAM:PF02840 | PFAM:PF08799 | InterPro:PRP4-like |
| InterPro:PRP4-like_sf | PANTHER:PTHR13007 | PANTHER:PTHR13007:SF23 | InterPro:Prp18 | SMART:SM00500 | SUPFAM:SSF158230 |
| SUPFAM:SSF47938 | UniParc:UPI0004EEB919 | SEG:seg | : | : | : |
Description
BnaA08g27340DBnaA08g27340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FLZ3]
Coordinates
chrLK032055:-:89370..91292
Molecular Weight (calculated)
48318.5 Da
IEP (calculated)
9.701
GRAVY (calculated)
-0.854
Length
425 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLLRQEILK KRQSLSEESG GKKFYKRSEI EQKKLQKLRE EERREHELKA QRRAAAAAAD NGGKSSIDSS APGSSTASAS TKSSASESAA IADSKSLTDE
101: KNIETLTLPR QEVIRRLRLL KQPVTLFGED DQARLDRLKY VLKEGLFEVD SDVTDGQTND FLRDISELKK RQKSGIMGDR KRKGRDERGR EEGDRGETRD
201: GELSSGGESS DVDADKDLKR LKSNFEDLCD EDKILVFYKK LLIEWKQELD AVENTERRTA KGKKNVATFK QCARYLTPLF NLCRKKGLPS DIRQALMVMV
301: KHCIKRDYLA AMDHYIKLAI GNAPWPIGVT MVGIHERSAR EKIHTNSVAH IMNDETTRKY LQSVKRLMTF CQRRYPTMPS KAVEFNSLAN GSDLQSLLAE
401: ERHFGGDRAQ VSEERLRLMP SQNDS
101: KNIETLTLPR QEVIRRLRLL KQPVTLFGED DQARLDRLKY VLKEGLFEVD SDVTDGQTND FLRDISELKK RQKSGIMGDR KRKGRDERGR EEGDRGETRD
201: GELSSGGESS DVDADKDLKR LKSNFEDLCD EDKILVFYKK LLIEWKQELD AVENTERRTA KGKKNVATFK QCARYLTPLF NLCRKKGLPS DIRQALMVMV
301: KHCIKRDYLA AMDHYIKLAI GNAPWPIGVT MVGIHERSAR EKIHTNSVAH IMNDETTRKY LQSVKRLMTF CQRRYPTMPS KAVEFNSLAN GSDLQSLLAE
401: ERHFGGDRAQ VSEERLRLMP SQNDS
001: MDLLREEILK KRKSLAEESG GKKFFKRSEI EQKKIQKLRE EERREHELKA QRRAAAAASG GDGKSSGSAP GSSNAATSAS SKSSASDAAA IADSKALTDE
101: NLILPRQEVI RRLRFLKQPM TLFGEDDQSR LDRLKYVLKE GLFEVDSDMT EGQTNDFLRD IAELKKRQKS GMMGDRKRKS RDERGRDEGD RGETREDELS
201: GGESSDVDAD KDMKRLKANF EDLCDEDKIL VFYKKLLIEW KQELDAMENT ERRTAKGKQM VATFKQCARY LVPLFNLCRK KGLPADIRQA LMVMVNHCIK
301: RDYLAAMDHY IKLAIGNAPW PIGVTMVGIH ERSAREKIYT NSVAHIMNDE TTRKYLQSVK RLMTFCQRRY PTMPSKAVEF NSLANGSDLQ SLLAEERFFG
401: GNREQVSEER LRLMPSQSES
101: NLILPRQEVI RRLRFLKQPM TLFGEDDQSR LDRLKYVLKE GLFEVDSDMT EGQTNDFLRD IAELKKRQKS GMMGDRKRKS RDERGRDEGD RGETREDELS
201: GGESSDVDAD KDMKRLKANF EDLCDEDKIL VFYKKLLIEW KQELDAMENT ERRTAKGKQM VATFKQCARY LVPLFNLCRK KGLPADIRQA LMVMVNHCIK
301: RDYLAAMDHY IKLAIGNAPW PIGVTMVGIH ERSAREKIYT NSVAHIMNDE TTRKYLQSVK RLMTFCQRRY PTMPSKAVEF NSLANGSDLQ SLLAEERFFG
401: GNREQVSEER LRLMPSQSES
Arabidopsis Description
F10O3.3 protein [Source:UniProtKB/TrEMBL;Acc:Q9SA55]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.