Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75227 | Canola | plastid | 88.24 | 17.93 |
| CDX68825 | Canola | plastid | 83.66 | 17.0 |
| AT4G32190.1 | Thale cress | plastid | 77.12 | 15.07 |
| KRH15859 | Soybean | endoplasmic reticulum, vacuole | 54.9 | 11.7 |
| KRH05183 | Soybean | plastid | 56.21 | 11.26 |
| PGSC0003DMT400010993 | Potato | plastid | 54.9 | 10.91 |
| VIT_04s0008g05610.t01 | Wine grape | plastid | 54.25 | 10.72 |
| Solyc08g022030.2.1 | Tomato | nucleus | 52.94 | 10.52 |
| CDY61790 | Canola | endoplasmic reticulum, extracellular | 18.95 | 7.67 |
| Os02t0186400-01 | Rice | plastid | 37.91 | 7.6 |
| TraesCS6A01G180500.1 | Wheat | plastid | 37.91 | 7.5 |
| TraesCS6D01G164600.1 | Wheat | plastid | 37.25 | 7.37 |
| HORVU6Hr1G036020.1 | Barley | plastid | 37.25 | 7.36 |
| Zm00001d053726_P001 | Maize | plastid | 32.03 | 6.36 |
| EES06399 | Sorghum | plastid | 31.37 | 6.2 |
| CDY35289 | Canola | nucleus | 5.23 | 2.14 |
| CDY61791 | Canola | nucleus | 1.96 | 1.94 |
| CDX95298 | Canola | nucleus | 5.23 | 0.8 |
| CDY02356 | Canola | cytosol | 0.65 | 0.61 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 0.0 | 0.0 |
| CDX81489 | Canola | nucleus | 0.0 | 0.0 |
| CDX81487 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX81488 | EnsemblPlantsGene:GSBRNA2T00135103001 | ncoils:Coil | PANTHER:PTHR23160 | PANTHER:PTHR23160:SF11 | ProteinID:CDX81488 |
| ProteinID:CDX81488.1 | SEG:seg | UniParc:UPI0004EE5B3D | MapMan:35.2 | : | : |
Description
BnaC02g17920D
Coordinates
chrLK031825:-:233252..233713
Molecular Weight (calculated)
18338.8 Da
IEP (calculated)
4.755
GRAVY (calculated)
-0.870
Length
153 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDFKRVRKL LTDVRFELVS SREALLSSRE QMGEKEVLLE KQLEELEEQR RSVLSYMQSL RDARGEVESE RVKLRVAEAK NFVLERETSL QKELLEDLRE
101: ELKKEKSLLE EAMRDVSTIQ DELDKKTNEF QVSQTQLQEK ESSWWRLNLR FSI
101: ELKKEKSLLE EAMRDVSTIQ DELDKKTNEF QVSQTQLQEK ESSWWRLNLR FSI
001: MGFSQAIRLN LASFSSPSPC DYCLTRVVNH KQKSLVAFPS ITRRKRHLLL SVQSVLHNTR PNINDNGSAE SANVLFDKLF ARTHRLERQT NQHSVYPDDD
101: DLPYSNLGVL ESDLEAALVA LLKREEDLHD AERKLLSDKN KLNRAKEELE KREKTISEAS LKHESLQEEL KRANVELASQ AREIEELKHK LRERDEERAA
201: LQSSLTLKEE ELEKMRQEIA NRSKEVSMAI SEFESKSQLL SKANEVVKRQ EGEIYALQRA LEEKEEELEI SKATKKLEQE KLRETEANLK KQTEEWLIAQ
301: DEVNKLKEET VKRLGEANET MEDFMKVKKL LTDVRFELIS SREALVFSRE QMEEKELLLE KQLEELEEQR KSVLSYMQSL RDAHTEVESE RVKLRVVEAK
401: NFALEREISV QKELLEDLRE ELQKEKPLLE LAMHDISVIQ DELYKKANAF QVSQNLLQEK ESSLVEAKLE IQHLKSEQAS LELLLQEKDE ELAEARNKLG
501: EVNQEVTELK ALMISREDQL MEATEMLKEK DVHLHRIEGE LGSSKLKVTE AEMVVERIAE LTNRLLMSTT NGQNQNAMRI NNEISIDSMQ QPLEKPHDDY
601: GMENKRLVME LSFTRENLRM KEMEVLAVQR ALTFKDEEIN VVMGRLEAKE QELKKLKEET INDSEDLKVL YALAQERVGE KTMGDLAIEM LQLEAANLEV
701: EAATSALQKL AKMSTELLTQ ADMSIEADTT HTVMPERGYS EGSNECLGEV KTEVVRLWSL TEKLLENAGI VAGTSTCMEG VIL
101: DLPYSNLGVL ESDLEAALVA LLKREEDLHD AERKLLSDKN KLNRAKEELE KREKTISEAS LKHESLQEEL KRANVELASQ AREIEELKHK LRERDEERAA
201: LQSSLTLKEE ELEKMRQEIA NRSKEVSMAI SEFESKSQLL SKANEVVKRQ EGEIYALQRA LEEKEEELEI SKATKKLEQE KLRETEANLK KQTEEWLIAQ
301: DEVNKLKEET VKRLGEANET MEDFMKVKKL LTDVRFELIS SREALVFSRE QMEEKELLLE KQLEELEEQR KSVLSYMQSL RDAHTEVESE RVKLRVVEAK
401: NFALEREISV QKELLEDLRE ELQKEKPLLE LAMHDISVIQ DELYKKANAF QVSQNLLQEK ESSLVEAKLE IQHLKSEQAS LELLLQEKDE ELAEARNKLG
501: EVNQEVTELK ALMISREDQL MEATEMLKEK DVHLHRIEGE LGSSKLKVTE AEMVVERIAE LTNRLLMSTT NGQNQNAMRI NNEISIDSMQ QPLEKPHDDY
601: GMENKRLVME LSFTRENLRM KEMEVLAVQR ALTFKDEEIN VVMGRLEAKE QELKKLKEET INDSEDLKVL YALAQERVGE KTMGDLAIEM LQLEAANLEV
701: EAATSALQKL AKMSTELLTQ ADMSIEADTT HTVMPERGYS EGSNECLGEV KTEVVRLWSL TEKLLENAGI VAGTSTCMEG VIL
Arabidopsis Description
Myosin heavy chain-related protein [Source:UniProtKB/TrEMBL;Acc:Q8H1E5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.