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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 3
  • extracellular 1
  • cytosol 1
  • mitochondrion 1
  • plastid 2
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, extracellular, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:extracellular
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:plastid
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX70811
CDX74700
CDX92658
CDY03412
CDY11039
CDY18962
CDY27400
CDY34317
CDY37020
CDY51233

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G15385.1 CDX74700 AT2G44950.1 21798944
AT1G15385.1 CDY18962 AT2G44950.1 21798944
AT1G15385.1 CDY27400 AT2G44950.1 21798944
AT1G15385.1 CDY37020 AT2G44950.1 21798944
AT1G15385.1 CDX70811 AT4G24840.1 21798944
AT1G15385.1 CDX92658 AT4G24840.1 21798944
AT1G15385.1 CDY03412 AT4G24840.1 21798944
AT1G15385.1 CDY11039 AT4G24840.1 21798944
AT1G15385.1 CDY34317 AT4G24840.1 21798944
AT1G15385.1 CDY51233 AT4G24840.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra026767.1-P Field mustard plastid 100.0 100.0
CDX81710 Canola plastid 98.68 98.68
CDX96843 Canola cytosol 89.47 90.67
CDY39640 Canola cytosol 89.47 90.67
CDY36554 Canola cytosol 84.21 86.49
AT1G15385.1 Thale cress cytosol 76.32 79.45
Protein Annotations
EnsemblPlants:CDY55983EnsemblPlantsGene:GSBRNA2T00017638001InterPro:DUF761_plnPANTHER:PTHR33098PANTHER:PTHR33098:SF6PFAM:PF05553
ProteinID:CDY55983ProteinID:CDY55983.1SEG:segUniParc:UPI0002542CC5UniProt:A0A078J1V0MapMan:35.2
Description
BnaA09g56800DBnaA09g56800D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J1V0]
Coordinates
chrLK033445:-:33216..33446
Molecular Weight (calculated)
8648.4 Da
IEP (calculated)
10.399
GRAVY (calculated)
-0.807
Length
76 amino acids
Sequence
(BLAST)
1: MMNNNNNKNN LKMSSAQESG NGTTNIVITE TRNNKKVERK ASMDVDKCAE AFITNFRKQL LLQRLESIEN MLSRGL
Best Arabidopsis Sequence Match ( AT1G15385.1 )
(BLAST)
1: MNNNKNMKMM MSSAKESGNG TTNIVIKETM NKKVERKASM DVDKSAEAFI TKFRNQLLLQ RLESIENMLS KGP
Arabidopsis Description
Cotton fiber protein [Source:UniProtKB/TrEMBL;Acc:Q8L7A6]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.