Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY11039 | Canola | cytosol | 96.96 | 96.96 |
| CDY03412 | Canola | plastid | 91.81 | 91.45 |
| CDY34317 | Canola | cytosol, plastid | 90.89 | 90.77 |
| AT4G24840.1 | Thale cress | cytosol, plastid | 85.73 | 85.85 |
| CDY51233 | Canola | cytosol, plastid | 72.13 | 75.41 |
| CDX70811 | Canola | plastid | 71.6 | 74.76 |
| KRH03947 | Soybean | cytosol | 68.03 | 68.21 |
| VIT_17s0000g01560.t01 | Wine grape | cytosol | 67.24 | 67.78 |
| KRH57220 | Soybean | cytosol | 66.84 | 67.02 |
| PGSC0003DMT400067640 | Potato | cytosol, plastid | 63.94 | 65.23 |
| Solyc08g006660.1.1 | Tomato | plastid | 63.67 | 64.96 |
| GSMUA_AchrUn_... | Banana | cytosol | 59.97 | 60.53 |
| Zm00001d012851_P001 | Maize | cytosol | 56.14 | 57.51 |
| OQU90613 | Sorghum | cytosol | 56.8 | 57.49 |
| Os03t0849600-01 | Rice | cytosol | 56.14 | 56.37 |
| HORVU5Hr1G121540.1 | Barley | cytosol | 53.9 | 55.21 |
| TraesCS5B01G549700.1 | Wheat | cytosol | 55.22 | 54.71 |
| TraesCS5D01G536700.1 | Wheat | cytosol | 55.22 | 54.71 |
| TraesCS4A01G335400.1 | Wheat | cytosol | 55.22 | 54.5 |
| Zm00001d034842_P001 | Maize | cytosol | 56.41 | 53.71 |
Protein Annotations
| EnsemblPlants:CDX92658 | EnsemblPlantsGene:GSBRNA2T00154469001 | GO:A0A078DZF2 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0007030 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016043 | InterPro:COG2 |
| InterPro:COG_complex_COG2_C | InterPro:COG_su2_N | ncoils:Coil | PANTHER:PTHR12961 | PFAM:PF06148 | PFAM:PF12022 |
| ProteinID:CDX92658 | ProteinID:CDX92658.1 | SEG:seg | UniParc:UPI0004EDE325 | MapMan:22.6.2.2 | : |
Description
BnaC07g39160D
Coordinates
chrLK031873:-:216521..220776
Molecular Weight (calculated)
84739.2 Da
IEP (calculated)
6.225
GRAVY (calculated)
-0.125
Length
757 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDLVAPLPS PSSAPRSASD FFSDPYDSHP LWFKPSLFLS PDFDSESYIS ELRTFVPFDT LRSELRSHLA SLNRELVDLI NRDYADFVSL STKLVDIDEA
101: VVRMRAPLLG IREKIAAFRG SVEAALFALR SGLQQRSDAA AAREVLELLL DTFHVVSKVE KLIKVLPSAP SDWKNEDGVS LGRSSVNVEN STQQDGTTMR
201: ETQSMLLERI ASEMNRLKFY MAHAQNLPFV ENMEKRIQSA SVLLDASLGH CFIDGLNNTD TSVLYNCLRA YAAIDNTTNA EEIFRTTIVA PFIHKTIALE
301: TSADATGSSD ELENDYKLIK HFIAKDCKML IEISSTEKSG LHVFNFLANS ILKEVFSAIQ KVKPGAFSPG RPTEFLKNYK ASLDFLAYLE GYCPSRFAVT
401: KFRTEAVCIE FMKQWNVGVY FSLRFQEIAG ALDSALTSSS LVFIKDSDLD KQSFPNLMLR QSATLLESLR SCWKEDVLVF SAADKFLRLT LQLLSRYCVW
501: VSSALHTRKG NASPSPGCDW AVSASAEDFV YVIHDVNYLA SEVCGDYLKH ISQYISSCST EVRDVVRMSI LQGGDKLKEV LPSLANTIIE IIVDKSVEDL
601: RQVKGITATY RLTNKPPPVR HSPYVVGILR HVKAFLEGEK ATRYLTQATR EELLLRTVTE ITRRYYELAD EVVSVARRTE SSLQQFRRKA QKRAGAASGV
701: SDDNVSETDK MCMQLFLDTQ EYGRNISALG LKPAEIPVYC SLWQCVAPAD RQNTISV
101: VVRMRAPLLG IREKIAAFRG SVEAALFALR SGLQQRSDAA AAREVLELLL DTFHVVSKVE KLIKVLPSAP SDWKNEDGVS LGRSSVNVEN STQQDGTTMR
201: ETQSMLLERI ASEMNRLKFY MAHAQNLPFV ENMEKRIQSA SVLLDASLGH CFIDGLNNTD TSVLYNCLRA YAAIDNTTNA EEIFRTTIVA PFIHKTIALE
301: TSADATGSSD ELENDYKLIK HFIAKDCKML IEISSTEKSG LHVFNFLANS ILKEVFSAIQ KVKPGAFSPG RPTEFLKNYK ASLDFLAYLE GYCPSRFAVT
401: KFRTEAVCIE FMKQWNVGVY FSLRFQEIAG ALDSALTSSS LVFIKDSDLD KQSFPNLMLR QSATLLESLR SCWKEDVLVF SAADKFLRLT LQLLSRYCVW
501: VSSALHTRKG NASPSPGCDW AVSASAEDFV YVIHDVNYLA SEVCGDYLKH ISQYISSCST EVRDVVRMSI LQGGDKLKEV LPSLANTIIE IIVDKSVEDL
601: RQVKGITATY RLTNKPPPVR HSPYVVGILR HVKAFLEGEK ATRYLTQATR EELLLRTVTE ITRRYYELAD EVVSVARRTE SSLQQFRRKA QKRAGAASGV
701: SDDNVSETDK MCMQLFLDTQ EYGRNISALG LKPAEIPVYC SLWQCVAPAD RQNTISV
001: MSDLVATSPS PSSAPRSATD FFSDPYDSHP LWFKPSLFLS PNFDSESYIS ELRTFVPFDT LRSELRSHLA SLNRELVDLI NRDYADFVNL STKLVDIDAA
101: VVRMRAPLLE LREKITGFRG SVEAALFALR NGLQQRSDAA AAREVLELLL DTFHVVSKVE KLIKVLPSTP SDWQNEDANS MGRSSMNDEN STQQDGTTMR
201: ETQSMLLERI ASEMNRLKFY MAHAQNLPFI ENMEKRIQSA SVLLDASLGH CFIDGLNNSD TSVLYNCLRA YAAIDNTNAA EEIFRTTIVA PFIQKIITHE
301: TTTNAAGTSE DELENDYKQI KHFIAKDCKM LLEISSTDKS GLHVFDFLAN SILKEVLWAI QKVKPGAFSP GRPTEFLKNY KASLDFLAYL EGYCPSRSAV
401: TKFRAEAICV EFMKQWNVGV YFSLRFQEIA GALDSALTSP SLVFIQDSDK ESSLNLILRQ SDTLLECLRS CWKEDVLVFS AADKFLRLTL QLLSRYSFWV
501: SSALNNRKSN ASPSPGCEWA VSATAEDFVY VIHDVNCLVS EVCGDYLGHI SQYLSSSSTE VLDVVRISIE QGGVSLEKVL PLLTKTIIDV IVDKSVEDLR
601: QLRGITATFR MTNKPLPVRH SPYVVGLLRP VKAFLEGDKA RNYLTQKTKE ELLHGSVSEI TRRYYELAAD VVSVARKTQS SLQKLRQNAQ RRGGAASGVS
701: DQNVSETDKM CMQLFLDIQE YGRNVSALGL KPADIPEYCS FWQCVAPADR QNSISV
101: VVRMRAPLLE LREKITGFRG SVEAALFALR NGLQQRSDAA AAREVLELLL DTFHVVSKVE KLIKVLPSTP SDWQNEDANS MGRSSMNDEN STQQDGTTMR
201: ETQSMLLERI ASEMNRLKFY MAHAQNLPFI ENMEKRIQSA SVLLDASLGH CFIDGLNNSD TSVLYNCLRA YAAIDNTNAA EEIFRTTIVA PFIQKIITHE
301: TTTNAAGTSE DELENDYKQI KHFIAKDCKM LLEISSTDKS GLHVFDFLAN SILKEVLWAI QKVKPGAFSP GRPTEFLKNY KASLDFLAYL EGYCPSRSAV
401: TKFRAEAICV EFMKQWNVGV YFSLRFQEIA GALDSALTSP SLVFIQDSDK ESSLNLILRQ SDTLLECLRS CWKEDVLVFS AADKFLRLTL QLLSRYSFWV
501: SSALNNRKSN ASPSPGCEWA VSATAEDFVY VIHDVNCLVS EVCGDYLGHI SQYLSSSSTE VLDVVRISIE QGGVSLEKVL PLLTKTIIDV IVDKSVEDLR
601: QLRGITATFR MTNKPLPVRH SPYVVGLLRP VKAFLEGDKA RNYLTQKTKE ELLHGSVSEI TRRYYELAAD VVSVARKTQS SLQKLRQNAQ RRGGAASGVS
701: DQNVSETDKM CMQLFLDIQE YGRNVSALGL KPADIPEYCS FWQCVAPADR QNSISV
Arabidopsis Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein transport, Golgi organization; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: COG complex component, COG2 (InterP /.../009316); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT4G24840]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.