Factsheet for Os03t0849600-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0104800-01
Os01t0218200-00
Os01t0763750-01
Os02t0730500-01
Os03t0225600-01
Os03t0260600-01
Os03t0797600-01
Os03t0849600-01
Os04t0550400-01
Os05t0210600-01
Os05t0587300-01
Os07t0182200-01
Os08t0432800-01
Os09t0410700-00
Os11t0104866-00
Os11t0104900-00
Os11t0148600-01
Os12t0104766-00
Os12t0104800-01
Os12t0146400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24840.1	Os03t0225600-01	AT1G31780.1	21798944
AT4G24840.1	Os02t0730500-01	AT1G54770.1	21798944
AT4G24840.1	Os01t0218200-00	AT2G42580.1	21798944
AT4G24840.1	Os05t0210600-01	AT2G42580.1	21798944
AT4G24840.1	Os05t0587300-01	AT2G42580.1	21798944
AT4G24840.1	Os01t0104800-01	AT2G43650.1	21798944
AT4G24840.1	Os04t0550400-01	AT2G44950.1	21798944
AT4G24840.1	Os11t0104866-00	AT3G08530.1	21798944
AT4G24840.1	Os11t0104900-00	AT3G08530.1	21798944
AT4G24840.1	Os12t0104766-00	AT3G08530.1	21798944
AT4G24840.1	Os12t0104800-01	AT3G08530.1	21798944
AT4G24840.1	Os03t0260600-01	AT3G25710.1	21798944
AT4G24840.1	Os08t0432800-01	AT3G25710.1	21798944
AT4G24840.1	Os09t0410700-00	AT3G25710.1	21798944
AT4G24840.1	Os03t0797600-01	AT4G02590.1	21798944
AT4G24840.1	Os07t0182200-01	AT4G02590.1	21798944
AT4G24840.1	Os03t0849600-01	AT4G24840.1	21798944
AT4G24840.1	Os11t0148600-01	AT5G49210.1	21798944
AT4G24840.1	Os12t0146400-01	AT5G49210.1	21798944
AT4G24840.1	Os01t0763750-01	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G121540.1	Barley	cytosol	84.62	86.33
TraesCS5D01G536700.1	Wheat	cytosol	86.21	85.08
TraesCS5B01G549700.1	Wheat	cytosol	86.07	84.95
OQU90613	Sorghum	cytosol	83.82	84.49
TraesCS4A01G335400.1	Wheat	cytosol	85.94	84.48
Zm00001d012851_P001	Maize	cytosol	82.36	84.03
Zm00001d034842_P001	Maize	cytosol	81.7	77.48
GSMUA_AchrUn_...	Banana	cytosol	65.52	65.87
PGSC0003DMT400067640	Potato	cytosol, plastid	58.75	59.7
Solyc08g006660.1.1	Tomato	plastid	58.62	59.57
VIT_17s0000g01560.t01	Wine grape	cytosol	59.02	59.25
AT4G24840.1	Thale cress	cytosol, plastid	57.96	57.8
KRH03947	Soybean	cytosol	57.82	57.75
Bra013840.1-P	Field mustard	mitochondrion	49.6	57.1
KRH57220	Soybean	cytosol	57.03	56.95
CDY34317	Canola	cytosol, plastid	56.5	56.2
CDX92658	Canola	plastid	56.37	56.14
CDY11039	Canola	cytosol	56.23	56.01
CDY03412	Canola	plastid	56.1	55.66
CDX70811	Canola	plastid	51.46	53.52
CDY51233	Canola	cytosol, plastid	50.93	53.04
Bra006453.1-P	Field mustard	cytosol, plastid	50.8	52.9
Bra019205.1-P	Field mustard	cytosol	56.1	49.65

Protein Annotations

MapMan:22.6.2.2	EntrezGene:4334786	ProteinID:AAO37946.1	ProteinID:ABF99909.1	ProteinID:BAF13812.1	ProteinID:BAS87364.1
InterPro:COG2	InterPro:COG_complex_COG2_C	InterPro:COG_su2_N	ncoils:Coil	ProteinID:EAZ29309.1	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773
GO:GO:0005794	GO:GO:0006810	GO:GO:0006891	GO:GO:0007030	GO:GO:0008150	GO:GO:0008565
GO:GO:0009987	GO:GO:0015031	GO:GO:0016020	GO:GO:0016043	GO:GO:0017119	EnsemblPlantsGene:Os03g0849600
EnsemblPlants:Os03t0849600-01	PFAM:PF06148	PFAM:PF12022	PANTHER:PTHR12961	UniProt:Q84LH7	UniParc:UPI0000002759
RefSeq:XP_015632918.1	SEG:seg	:	:	:	:

Description

COG complex component, COG2 family protein. (Os03t0849600-01)

Coordinates

chr3:-:35736085..35741607

Molecular Weight (calculated)

83581.1 Da

IEP (calculated)

6.090

GRAVY (calculated)

-0.147

Length

754 amino acids

Sequence
(BLAST)

001: MADLAVAAPP PTDLFGEPIE AHPPWFKPDS FLRPDFDPDA YVADLRSYVP LDSLAAELRS HLASLRAELV GLINRDYADF VGLSARLKGV DAAAARMRPP
101: LAELRDKVAS FRAAAAAGLA ALRSGLEQRA AATAARELLE LLLDTSHVVS KVEKLIKELP SAPSDSSNVE AVSGDKGYSG NVATPPNMDD GTDVRETQSI
201: LLERIASEMN RLKFYISHAQ NLPFIENMEK RAQGATKLLD GSLERCFVDG LEHRDDKVIY NCLRAYAAID NTSSAEEIFR TTVVSPLIQK IVPQNYAKVV
301: AGVSSDDLED DYEQIMQCVE KDCKFILEIS SLANSGLHVF DFLANSILKE VHLAIQKGKP GATSPGKPKQ FLKNYKASLR FLDFLEGYCS SKPAVTKFRS
401: EPAYADFMRQ WHVAVYFTLK FQDIAGGLDS VLTATITPAG MHDNQAKPQT LLLKQSVKLL ESLQACWSDD VLVFSHSDKF LRLSLQLISR YTTWLSSGLA
501: ARKASDGGSS SPADAEWALS VPVEDFIYVM HDVNAVISEL LESGQFVEHV NQLLASCPTE VLALVKHSIL QAVEPLKELL PAIMNVMIMV IVKRSNEDLK
601: HLKGITATYR MTNKLPVRHS PYVSGILHPL KVFLEGDRIH YLSEDDKAKL RRGSTDKITS IYYDMVSEVV TVARKTESSL QRLRQGAQRR VGANTDTSDN
701: IISDTDKICM QLFLDIQEYA RNLRAIGIDA REIETFRALW QCVAPRDKQD NIQF

Best Arabidopsis Sequence Match ( AT4G24840.1 )
(BLAST)

001: MSDLVATSPS PSSAPRSATD FFSDPYDSHP LWFKPSLFLS PNFDSESYIS ELRTFVPFDT LRSELRSHLA SLNRELVDLI NRDYADFVNL STKLVDIDAA
101: VVRMRAPLLE LREKITGFRG SVEAALFALR NGLQQRSDAA AAREVLELLL DTFHVVSKVE KLIKVLPSTP SDWQNEDANS MGRSSMNDEN STQQDGTTMR
201: ETQSMLLERI ASEMNRLKFY MAHAQNLPFI ENMEKRIQSA SVLLDASLGH CFIDGLNNSD TSVLYNCLRA YAAIDNTNAA EEIFRTTIVA PFIQKIITHE
301: TTTNAAGTSE DELENDYKQI KHFIAKDCKM LLEISSTDKS GLHVFDFLAN SILKEVLWAI QKVKPGAFSP GRPTEFLKNY KASLDFLAYL EGYCPSRSAV
401: TKFRAEAICV EFMKQWNVGV YFSLRFQEIA GALDSALTSP SLVFIQDSDK ESSLNLILRQ SDTLLECLRS CWKEDVLVFS AADKFLRLTL QLLSRYSFWV
501: SSALNNRKSN ASPSPGCEWA VSATAEDFVY VIHDVNCLVS EVCGDYLGHI SQYLSSSSTE VLDVVRISIE QGGVSLEKVL PLLTKTIIDV IVDKSVEDLR
601: QLRGITATFR MTNKPLPVRH SPYVVGLLRP VKAFLEGDKA RNYLTQKTKE ELLHGSVSEI TRRYYELAAD VVSVARKTQS SLQKLRQNAQ RRGGAASGVS
701: DQNVSETDKM CMQLFLDIQE YGRNVSALGL KPADIPEYCS FWQCVAPADR QNSISV

Arabidopsis Description

FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein transport, Golgi organization; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: COG complex component, COG2 (InterP /.../009316); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT4G24840]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.