Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX92658 | Canola | plastid | 96.96 | 96.96 |
| CDY03412 | Canola | plastid | 91.15 | 90.79 |
| CDY34317 | Canola | cytosol, plastid | 89.96 | 89.84 |
| Bra019205.1-P | Field mustard | cytosol | 98.28 | 87.32 |
| AT4G24840.1 | Thale cress | cytosol, plastid | 85.47 | 85.58 |
| CDY51233 | Canola | cytosol, plastid | 71.73 | 75.0 |
| CDX70811 | Canola | plastid | 71.47 | 74.62 |
| KRH03947 | Soybean | cytosol | 67.77 | 67.95 |
| VIT_17s0000g01560.t01 | Wine grape | cytosol | 66.71 | 67.24 |
| KRH57220 | Soybean | cytosol | 66.31 | 66.49 |
| PGSC0003DMT400067640 | Potato | cytosol, plastid | 63.28 | 64.56 |
| Solyc08g006660.1.1 | Tomato | plastid | 63.01 | 64.29 |
| GSMUA_AchrUn_... | Banana | cytosol | 59.58 | 60.13 |
| Zm00001d012851_P001 | Maize | cytosol | 56.01 | 57.37 |
| OQU90613 | Sorghum | cytosol | 56.67 | 57.35 |
| Os03t0849600-01 | Rice | cytosol | 56.01 | 56.23 |
| HORVU5Hr1G121540.1 | Barley | cytosol | 53.76 | 55.07 |
| TraesCS5B01G549700.1 | Wheat | cytosol | 55.09 | 54.58 |
| TraesCS5D01G536700.1 | Wheat | cytosol | 55.09 | 54.58 |
| TraesCS4A01G335400.1 | Wheat | cytosol | 55.22 | 54.5 |
| Zm00001d034842_P001 | Maize | cytosol | 56.14 | 53.46 |
Protein Annotations
| MapMan:22.6.2.2 | GO:A0A078FDQ4 | UniProt:A0A078FDQ4 | EnsemblPlants:CDY11039 | ProteinID:CDY11039 | ProteinID:CDY11039.1 |
| InterPro:COG2 | InterPro:COG_complex_COG2_C | InterPro:COG_su2_N | ncoils:Coil | GO:GO:0005575 | GO:GO:0006810 |
| GO:GO:0007030 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016043 |
| EnsemblPlantsGene:GSBRNA2T00048995001 | PFAM:PF06148 | PFAM:PF12022 | PANTHER:PTHR12961 | UniParc:UPI0004EEA611 | SEG:seg |
Description
BnaA03g46980DBnaA03g46980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FDQ4]
Coordinates
chrLK032008:-:756742..761048
Molecular Weight (calculated)
84800.2 Da
IEP (calculated)
6.465
GRAVY (calculated)
-0.132
Length
757 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDLIAPLPS PSSAPRSASD FFSDPYDSHP LWFKPSLFLS PDFDSESYIS ELRTFVPFDT LRSELRSHLA SLNRELVDLI NRDYADFVSL STKLVDIDEA
101: VVRMRAPLLG IREKIAAFRG SVEAALFALR SGLQQRSDAA AAREVLELLL DTFHVVSKVE KLIKVLPSAP SDWQKEDGVS LGRSAVNVEN ATQQDGNTMR
201: ETQSMLLERI ASEMNRLKFY MAHAQNLPFV ENMEKRIQSA SVLLDASLGH CFIDGLNNSD TSVLYNCLRA YAAIDNTTNA EEIFRTTIVA PFIHKTIAHE
301: RSADATGSSD ELENDYKLIK HFIAKDCKML IEISSTEKSG LHVFNFLANS ILKEVLSAIQ KVKPGAFSPG RPTEFLKNYK ASLDFLAYLE GYCSSRSAVT
401: KFRTEAVCIE FMKQWNVGVY FSLRFQEIAG ALDSALTSSS LVFIQDSDLN KQSFPNLMLR QSATLLESLL SCWKEDVLVF SAADKFLRLT LQLLSRYCIW
501: VSSALHTRKG NASPSPGCDW AVSASAEDFV YVIHDVNYLV SEVCGDYHKH ISQFISSCST EVRDVVRMSI LQGGDRLREV LPSLTNTIIQ IIVDKSVEDL
601: RQVKGITATY RLTNKPPPVR HSPYVVGILR HVKAFLEGEK ATRYLTQATR EELLLRTVTE ITRRYYELAD EVVSVARRTE SSLQQFRRKA QKRAGAASGV
701: SDDNVSETDK MCMQLFLDTQ EYGRNISALG LKPAEIPVYC SLWQCVAPAD RQNTISV
101: VVRMRAPLLG IREKIAAFRG SVEAALFALR SGLQQRSDAA AAREVLELLL DTFHVVSKVE KLIKVLPSAP SDWQKEDGVS LGRSAVNVEN ATQQDGNTMR
201: ETQSMLLERI ASEMNRLKFY MAHAQNLPFV ENMEKRIQSA SVLLDASLGH CFIDGLNNSD TSVLYNCLRA YAAIDNTTNA EEIFRTTIVA PFIHKTIAHE
301: RSADATGSSD ELENDYKLIK HFIAKDCKML IEISSTEKSG LHVFNFLANS ILKEVLSAIQ KVKPGAFSPG RPTEFLKNYK ASLDFLAYLE GYCSSRSAVT
401: KFRTEAVCIE FMKQWNVGVY FSLRFQEIAG ALDSALTSSS LVFIQDSDLN KQSFPNLMLR QSATLLESLL SCWKEDVLVF SAADKFLRLT LQLLSRYCIW
501: VSSALHTRKG NASPSPGCDW AVSASAEDFV YVIHDVNYLV SEVCGDYHKH ISQFISSCST EVRDVVRMSI LQGGDRLREV LPSLTNTIIQ IIVDKSVEDL
601: RQVKGITATY RLTNKPPPVR HSPYVVGILR HVKAFLEGEK ATRYLTQATR EELLLRTVTE ITRRYYELAD EVVSVARRTE SSLQQFRRKA QKRAGAASGV
701: SDDNVSETDK MCMQLFLDTQ EYGRNISALG LKPAEIPVYC SLWQCVAPAD RQNTISV
001: MSDLVATSPS PSSAPRSATD FFSDPYDSHP LWFKPSLFLS PNFDSESYIS ELRTFVPFDT LRSELRSHLA SLNRELVDLI NRDYADFVNL STKLVDIDAA
101: VVRMRAPLLE LREKITGFRG SVEAALFALR NGLQQRSDAA AAREVLELLL DTFHVVSKVE KLIKVLPSTP SDWQNEDANS MGRSSMNDEN STQQDGTTMR
201: ETQSMLLERI ASEMNRLKFY MAHAQNLPFI ENMEKRIQSA SVLLDASLGH CFIDGLNNSD TSVLYNCLRA YAAIDNTNAA EEIFRTTIVA PFIQKIITHE
301: TTTNAAGTSE DELENDYKQI KHFIAKDCKM LLEISSTDKS GLHVFDFLAN SILKEVLWAI QKVKPGAFSP GRPTEFLKNY KASLDFLAYL EGYCPSRSAV
401: TKFRAEAICV EFMKQWNVGV YFSLRFQEIA GALDSALTSP SLVFIQDSDK ESSLNLILRQ SDTLLECLRS CWKEDVLVFS AADKFLRLTL QLLSRYSFWV
501: SSALNNRKSN ASPSPGCEWA VSATAEDFVY VIHDVNCLVS EVCGDYLGHI SQYLSSSSTE VLDVVRISIE QGGVSLEKVL PLLTKTIIDV IVDKSVEDLR
601: QLRGITATFR MTNKPLPVRH SPYVVGLLRP VKAFLEGDKA RNYLTQKTKE ELLHGSVSEI TRRYYELAAD VVSVARKTQS SLQKLRQNAQ RRGGAASGVS
701: DQNVSETDKM CMQLFLDIQE YGRNVSALGL KPADIPEYCS FWQCVAPADR QNSISV
101: VVRMRAPLLE LREKITGFRG SVEAALFALR NGLQQRSDAA AAREVLELLL DTFHVVSKVE KLIKVLPSTP SDWQNEDANS MGRSSMNDEN STQQDGTTMR
201: ETQSMLLERI ASEMNRLKFY MAHAQNLPFI ENMEKRIQSA SVLLDASLGH CFIDGLNNSD TSVLYNCLRA YAAIDNTNAA EEIFRTTIVA PFIQKIITHE
301: TTTNAAGTSE DELENDYKQI KHFIAKDCKM LLEISSTDKS GLHVFDFLAN SILKEVLWAI QKVKPGAFSP GRPTEFLKNY KASLDFLAYL EGYCPSRSAV
401: TKFRAEAICV EFMKQWNVGV YFSLRFQEIA GALDSALTSP SLVFIQDSDK ESSLNLILRQ SDTLLECLRS CWKEDVLVFS AADKFLRLTL QLLSRYSFWV
501: SSALNNRKSN ASPSPGCEWA VSATAEDFVY VIHDVNCLVS EVCGDYLGHI SQYLSSSSTE VLDVVRISIE QGGVSLEKVL PLLTKTIIDV IVDKSVEDLR
601: QLRGITATFR MTNKPLPVRH SPYVVGLLRP VKAFLEGDKA RNYLTQKTKE ELLHGSVSEI TRRYYELAAD VVSVARKTQS SLQKLRQNAQ RRGGAASGVS
701: DQNVSETDKM CMQLFLDIQE YGRNVSALGL KPADIPEYCS FWQCVAPADR QNSISV
Arabidopsis Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein transport, Golgi organization; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: COG complex component, COG2 (InterP /.../009316); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT4G24840]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.