CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY28102
CDY50960

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30260.1	CDY28102	AT1G49590.1	23524848
AT2G30260.1	CDY50960	AT1G49590.1	23524848

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10721	Canola	nucleus	97.81	97.81
AT2G30260.1	Thale cress	nucleus	80.7	79.31
PGSC0003DMT400078262	Potato	nucleus	71.05	69.83
KRH72767	Soybean	nucleus	71.05	69.83
KRH17128	Soybean	nucleus	70.61	69.4
VIT_06s0004g07530.t01	Wine grape	nucleus	70.61	68.8
Solyc06g082360.2.1	Tomato	nucleus	69.3	67.81
GSMUA_Achr3P09930_001	Banana	nucleus	64.91	62.98
Zm00001d047699_P001	Maize	extracellular, nucleus	63.16	61.8
EER92401	Sorghum	nucleus	62.72	61.37
Zm00001d028804_P001	Maize	nucleus	62.72	61.37
GSMUA_Achr10P...	Banana	nucleus	63.16	60.76
HORVU4Hr1G055040.1	Barley	nucleus	60.09	58.8
TraesCS4B01G188900.1	Wheat	nucleus	59.21	57.94
TraesCS4D01G190200.1	Wheat	nucleus	59.21	57.94
TraesCS4A01G115300.1	Wheat	nucleus	58.77	57.51
CDY63856	Canola	nucleus	51.75	46.27
CDX80118	Canola	nucleus	50.44	44.57
CDY39980	Canola	nucleus	27.63	38.65

Protein Annotations

MapMan:16.4.1.2.2	Gene3D:3.30.70.330	GO:A0A078ELT4	EnsemblPlants:CDY02052	ProteinID:CDY02052	ProteinID:CDY02052.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0017069	EnsemblPlantsGene:GSBRNA2T00113407001
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR10501
PANTHER:PTHR10501:SF32	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EDCE3C
SEG:seg	:	:	:	:	:

Description

BnaC04g14490D

Coordinates

chrLK031931:-:897631..899513

Molecular Weight (calculated)

26013.4 Da

IEP (calculated)

10.165

GRAVY (calculated)

-0.633

Length

228 amino acids

Sequence
(BLAST)

001: MLTADIPPNQ SIYIKNLNER IKKEELKRSL YCLFSQFGRI LDVVALKTPK LRGQAWVAFS DVTAATNAVR QMQNFPFYDK PMRIQFAKEK SDCIAREEGT
101: FVPKDKKRKK EEKAERKREE TQRPNTANGP TPQNGAPPPS SFKPSGQEAM PPNNILFIQN LPHDTTTAML EFLFRQYPGF KEIRMVAAKP GIAFAEFEDD
201: AKSSMAMQGL QDFKITPQYP MLISFAKK

Best Arabidopsis Sequence Match ( AT2G30260.1 )
(BLAST)

001: MLTADIPPNQ SIYIQNLNER IKKEELKRSL YCLFSQFGRI LDVVALKTPK LRGQAWVTFS EVTAAGHAVR QMQNFPFYDK PMRLQYAKAK SDCLAKAEGT
101: FVPKDKKRKQ EEKVERKRED SQRPNTANGP SANGPSANNG VPAPSFQPSG QETMPPNNIL FIQNLPHETT SMMLQLLFEQ YPGFKEIRMI DAKPGIAFVE
201: YEDDVQASIA MQPLQGFKIT PQNPMVISFA KK

Arabidopsis Description

U2B''U2 small nuclear ribonucleoprotein B'' [Source:UniProtKB/Swiss-Prot;Acc:O22922]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.