CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY12358
CDY27132

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47580.1	CDY12358	AT1G31750.1	21798944
AT2G47580.1	CDY27132	AT1G31750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004445.1-P	Field mustard	nucleus	98.84	98.84
CDY63856	Canola	nucleus	93.41	94.51
AT2G47580.1	Thale cress	nucleus	74.42	76.8
VIT_07s0005g00650.t01	Wine grape	nucleus	62.79	69.83
GSMUA_Achr11P...	Banana	nucleus	62.79	69.53
KRG97081	Soybean	nucleus	63.95	68.46
KRH68830	Soybean	nucleus	62.79	67.22
GSMUA_Achr2P02230_001	Banana	nucleus	65.12	67.2
Solyc09g075200.2.1	Tomato	nucleus	65.12	66.4
PGSC0003DMT400081386	Potato	nucleus	64.73	66.01
HORVU1Hr1G022420.1	Barley	nucleus	60.47	62.65
TraesCS1B01G127700.1	Wheat	nucleus	60.47	62.65
TraesCS1A01G096000.1	Wheat	nucleus	60.08	62.25
TraesCS1D01G105000.1	Wheat	nucleus	60.08	62.25
Zm00001d037602_P001	Maize	extracellular	58.91	59.84
EES17747	Sorghum	nucleus	58.53	58.3
CDY39980	Canola	nucleus	36.05	57.06
CDY10721	Canola	nucleus	44.96	50.88
CDY02052	Canola	nucleus	44.57	50.44

Protein Annotations

MapMan:16.4.1.1.2	Gene3D:3.30.70.330	GO:A0A078CYE6	EnsemblPlants:CDX80118	ProteinID:CDX80118	ProteinID:CDX80118.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0017069	EnsemblPlantsGene:GSBRNA2T00133023001
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR10501
PANTHER:PTHR10501:SF40	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EE2BAA
SEG:seg	:	:	:	:	:

Description

BnaA05g00380D

Coordinates

chrLK031819:+:1969021..1970383

Molecular Weight (calculated)

28554.3 Da

IEP (calculated)

9.936

GRAVY (calculated)

-0.541

Length

258 amino acids

Sequence
(BLAST)

001: MEMMQQEEAA AAAAAANKAG SEVTQNQTIY INNLNEKVKL DEVKKSLKEV FSAYGKIVEV LAFKTLKHKG QAWVVFDNPE SASNAISKMN GYPFYNKPMR
101: IQFAKTKSDV IAKADGTFVP REKRKRHEEK GGKKKKEQHH DSTRVAMPAY PGVYGSAPPL SQVPYSGGGG GVKSNLPEAP APPNNILFVQ HLPHDTTPEI
201: LQNLFDKYHG FKEVRMVAAK PGIAFVEFAD EMQSTVAMHG LEGFTIQQTP MRITYAKK

Best Arabidopsis Sequence Match ( AT2G47580.1 )
(BLAST)

001: MEMQEANQGG GSEVSPNQTI YINNLNEKVK LDELKKSLNA VFSQFGKILE ILAFKTFKHK GQAWVVFDNT ESASTAIAKM NNFPFYDKEM RIQYAKTKSD
101: VVAKADGTFV PREKRKRHEE KGGGKKKKDQ HHDSTQMGMP MNSAYPGVYG AAPPLSQVPY PGGMKPNMPE APAPPNNILF VQNLPHETTP MVLQMLFCQY
201: QGFKEVRMIE AKPGIAFVEF ADEMQSTVAM QGLQGFKIQQ NQMLITYAKK

Arabidopsis Description

U1AU1A [Source:UniProtKB/TrEMBL;Acc:A0A178VZ67]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.