Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G47580.1 | CDY12358 | AT1G31750.1 | 21798944 |
| AT2G47580.1 | CDY27132 | AT1G31750.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY63856 | Canola | nucleus | 58.28 | 37.25 |
| VIT_07s0005g00650.t01 | Wine grape | nucleus | 51.53 | 36.21 |
| CDX80118 | Canola | nucleus | 57.06 | 36.05 |
| AT2G47580.1 | Thale cress | nucleus | 54.6 | 35.6 |
| KRG97081 | Soybean | nucleus | 52.15 | 35.27 |
| KRH68830 | Soybean | nucleus | 51.53 | 34.85 |
| Solyc09g075200.2.1 | Tomato | nucleus | 53.37 | 34.39 |
| GSMUA_Achr11P... | Banana | nucleus | 48.47 | 33.91 |
| TraesCS1B01G127700.1 | Wheat | nucleus | 51.53 | 33.73 |
| TraesCS1D01G105000.1 | Wheat | nucleus | 51.53 | 33.73 |
| PGSC0003DMT400081386 | Potato | nucleus | 52.15 | 33.6 |
| HORVU1Hr1G022420.1 | Barley | nucleus | 50.92 | 33.33 |
| TraesCS1A01G096000.1 | Wheat | nucleus | 50.92 | 33.33 |
| GSMUA_Achr2P02230_001 | Banana | nucleus | 50.92 | 33.2 |
| Zm00001d037602_P001 | Maize | extracellular | 49.69 | 31.89 |
| EES17747 | Sorghum | nucleus | 48.47 | 30.5 |
| CDY10721 | Canola | nucleus | 39.26 | 28.07 |
| CDY02052 | Canola | nucleus | 38.65 | 27.63 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078HN77 | UniProt:A0A078HN77 | EnsemblPlants:CDY39980 | ProteinID:CDY39980 |
| ProteinID:CDY39980.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0017069 |
| EnsemblPlantsGene:GSBRNA2T00068869001 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 |
| PANTHER:PTHR10501 | PANTHER:PTHR10501:SF40 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI0004EE3DBD | SEG:seg | : | : | : | : |
Description
BnaC06g40580DBnaC06g40580D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HN77]
Coordinates
chrLK032461:-:219830..222543
Molecular Weight (calculated)
18369.1 Da
IEP (calculated)
10.590
GRAVY (calculated)
-0.637
Length
163 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGDLELKKS LNAVFSRFGK IVEVLAFKTL KHKGQAWVVF DNPEPASNAI SKMNGFPFYN KPMRIQFAKR KSDVIAKADG TFVPREKRKR QEEKGEWIKR
101: LEEGSSERGV RSNTGCSRCD QHVRLAGGSF LKVSSHLQGR LMQSSHDGES GDTRMLILLA RED
101: LEEGSSERGV RSNTGCSRCD QHVRLAGGSF LKVSSHLQGR LMQSSHDGES GDTRMLILLA RED
001: MEMQEANQGG GSEVSPNQTI YINNLNEKVK LDELKKSLNA VFSQFGKILE ILAFKTFKHK GQAWVVFDNT ESASTAIAKM NNFPFYDKEM RIQYAKTKSD
101: VVAKADGTFV PREKRKRHEE KGGGKKKKDQ HHDSTQMGMP MNSAYPGVYG AAPPLSQVPY PGGMKPNMPE APAPPNNILF VQNLPHETTP MVLQMLFCQY
201: QGFKEVRMIE AKPGIAFVEF ADEMQSTVAM QGLQGFKIQQ NQMLITYAKK
101: VVAKADGTFV PREKRKRHEE KGGGKKKKDQ HHDSTQMGMP MNSAYPGVYG AAPPLSQVPY PGGMKPNMPE APAPPNNILF VQNLPHETTP MVLQMLFCQY
201: QGFKEVRMIE AKPGIAFVEF ADEMQSTVAM QGLQGFKIQQ NQMLITYAKK
Arabidopsis Description
U1AU1A [Source:UniProtKB/TrEMBL;Acc:A0A178VZ67]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.