CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97081	Soybean	nucleus	98.76	98.76
VIT_07s0005g00650.t01	Wine grape	nucleus	80.5	83.62
GSMUA_Achr11P...	Banana	nucleus	78.42	81.12
PGSC0003DMT400081386	Potato	nucleus	82.16	78.26
GSMUA_Achr2P02230_001	Banana	nucleus	80.91	78.0
Solyc09g075200.2.1	Tomato	nucleus	81.74	77.87
AT2G47580.1	Thale cress	nucleus	72.2	69.6
Zm00001d037602_P001	Maize	extracellular	70.12	66.54
HORVU1Hr1G022420.1	Barley	nucleus	68.46	66.27
TraesCS1B01G127700.1	Wheat	nucleus	68.46	66.27
TraesCS1D01G105000.1	Wheat	nucleus	68.46	66.27
TraesCS1A01G096000.1	Wheat	nucleus	68.05	65.86
EES17747	Sorghum	nucleus	69.71	64.86
CDY63856	Canola	nucleus	68.05	64.31
CDX80118	Canola	nucleus	67.22	62.79
Bra004445.1-P	Field mustard	nucleus	67.22	62.79
KRH17128	Soybean	nucleus	54.36	56.47
KRH72767	Soybean	nucleus	54.36	56.47
CDY39980	Canola	nucleus	34.85	51.53

Protein Annotations

MapMan:16.4.1.1.2	Gene3D:3.30.70.330	EMBL:ACUP02002125	EnsemblPlantsGene:GLYMA_03G253300	GO:GO:0000398	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005685	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0030619	GO:GO:0035614	UniProt:I1JRV0	InterPro:IPR000504	InterPro:IPR012677	EnsemblPlants:KRH68830
ProteinID:KRH68830	ProteinID:KRH68830.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR10501
PANTHER:PTHR10501:SF40	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI00023C1AED
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:44888171..44892626

Molecular Weight (calculated)

26879.6 Da

IEP (calculated)

9.979

GRAVY (calculated)

-0.410

Length

241 amino acids

Sequence
(BLAST)

001: MSEVNATPEI PQSNTIYINN LNEKIKIDEL KKSLNAVFTQ FGKILEVLAF KTLKHKGQAW VVFEDASSAS NALRQMQGFP FYDKPMRIQY AKTKSDIIAK
101: ADGTFVPREK RKRHDDKAKK RKDQHDANLA GMGLNPAYAG AYGAAPAIAY PGGAKSMVPE APAPPNNILF IQNLPNDSTP MMLQMLFLQY PGFKEVRMVE
201: TKPGIAFVEY GDEMQSTVAM QTLQGFKITP QNPMLITYAK K

Best Arabidopsis Sequence Match ( AT2G47580.1 )
(BLAST)

001: MEMQEANQGG GSEVSPNQTI YINNLNEKVK LDELKKSLNA VFSQFGKILE ILAFKTFKHK GQAWVVFDNT ESASTAIAKM NNFPFYDKEM RIQYAKTKSD
101: VVAKADGTFV PREKRKRHEE KGGGKKKKDQ HHDSTQMGMP MNSAYPGVYG AAPPLSQVPY PGGMKPNMPE APAPPNNILF VQNLPHETTP MVLQMLFCQY
201: QGFKEVRMIE AKPGIAFVEF ADEMQSTVAM QGLQGFKIQQ NQMLITYAKK

Arabidopsis Description

U1AU1A [Source:UniProtKB/TrEMBL;Acc:A0A178VZ67]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.