Factsheet for PGSC0003DMT400081386

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g075200.2.1	Tomato	nucleus	98.02	98.02
VIT_07s0005g00650.t01	Wine grape	nucleus	78.66	85.78
KRG97081	Soybean	nucleus	78.66	82.57
KRH68830	Soybean	nucleus	78.26	82.16
GSMUA_Achr11P...	Banana	nucleus	73.52	79.83
GSMUA_Achr2P02230_001	Banana	nucleus	76.28	77.2
AT2G47580.1	Thale cress	nucleus	73.12	74.0
TraesCS1A01G096000.1	Wheat	nucleus	68.77	69.88
TraesCS1D01G105000.1	Wheat	nucleus	68.38	69.48
TraesCS1B01G127700.1	Wheat	nucleus	68.38	69.48
HORVU1Hr1G022420.1	Barley	nucleus	68.38	69.48
Zm00001d037602_P001	Maize	extracellular	68.38	68.11
EES17747	Sorghum	nucleus	69.57	67.95
CDY63856	Canola	nucleus	66.8	66.27
Bra004445.1-P	Field mustard	nucleus	66.8	65.5
CDX80118	Canola	nucleus	66.01	64.73
PGSC0003DMT400078262	Potato	nucleus	53.36	58.19
CDY39980	Canola	nucleus	33.6	52.15

Protein Annotations

MapMan:16.4.1.1.2	Gene3D:3.30.70.330	ProteinID:CAA90282	ProteinID:CAA90282.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005685	GO:GO:0005730	GO:GO:0005737	GO:GO:0005829	InterPro:IPR000504	InterPro:IPR012677
UniProt:M1D4N8	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	EnsemblPlantsGene:PGSC0003DMG400031814	PGSC:PGSC0003DMG400031814	EnsemblPlants:PGSC0003DMT400081386
PFscan:PS50102	PANTHER:PTHR10501	PANTHER:PTHR10501:SF40	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI0002967CF4	EMBL:Z49990	SEG:seg	:	:

Description

U1snRNP-specific protein, U1A [Source:PGSC_GENE;Acc:PGSC0003DMG400031814]

Coordinates

chr9:-:52767622..52772757

Molecular Weight (calculated)

28003.9 Da

IEP (calculated)

9.891

GRAVY (calculated)

-0.468

Length

253 amino acids

Sequence
(BLAST)

001: MAEANQNTNP NPAPSGGEAP PNVTIYINNL NEKIKLEELK KSMHAVFSQF GKILEVLAFK TLKHKGQAWV VFEEVSSASN ALRQMQGFPF YDKPMRIQYA
101: KTKSDVVAKA DGTFVPREKR KRHEDKGRKK KDQQDSNQAG MGLNPAYAGA YGAAPPFSQI PYMGGAKAAV PEAPAPPNSI LFVQNLPHQS TPMMLQMLFC
201: QYPGFKEVRM VEAKPGIAFI EYGDEMQSTV AMQALQGFKI TAENPMLITY AKK

Best Arabidopsis Sequence Match ( AT2G47580.1 )
(BLAST)

001: MEMQEANQGG GSEVSPNQTI YINNLNEKVK LDELKKSLNA VFSQFGKILE ILAFKTFKHK GQAWVVFDNT ESASTAIAKM NNFPFYDKEM RIQYAKTKSD
101: VVAKADGTFV PREKRKRHEE KGGGKKKKDQ HHDSTQMGMP MNSAYPGVYG AAPPLSQVPY PGGMKPNMPE APAPPNNILF VQNLPHETTP MVLQMLFCQY
201: QGFKEVRMIE AKPGIAFVEF ADEMQSTVAM QGLQGFKIQQ NQMLITYAKK

Arabidopsis Description

U1AU1A [Source:UniProtKB/TrEMBL;Acc:A0A178VZ67]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.