Factsheet for Bra004445.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra038436.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47580.1	Bra038436.1-P	AT1G31750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80118	Canola	nucleus	98.84	98.84
AT2G47580.1	Thale cress	nucleus	73.64	76.0
VIT_07s0005g00650.t01	Wine grape	nucleus	63.57	70.69
GSMUA_Achr11P...	Banana	nucleus	62.79	69.53
KRG97081	Soybean	nucleus	63.95	68.46
KRH68830	Soybean	nucleus	62.79	67.22
GSMUA_Achr2P02230_001	Banana	nucleus	65.12	67.2
Solyc09g075200.2.1	Tomato	nucleus	65.89	67.19
PGSC0003DMT400081386	Potato	nucleus	65.5	66.8
TraesCS1B01G127700.1	Wheat	nucleus	61.24	63.45
TraesCS1A01G096000.1	Wheat	nucleus	60.85	63.05
TraesCS1D01G105000.1	Wheat	nucleus	60.85	63.05
HORVU1Hr1G022420.1	Barley	nucleus	60.47	62.65
Zm00001d037602_P001	Maize	extracellular	59.69	60.63
EES17747	Sorghum	nucleus	59.3	59.07
Bra018324.1-P	Field mustard	nucleus	45.74	51.75

Protein Annotations

MapMan:16.4.1.1.2	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra004445	EnsemblPlants:Bra004445.1	EnsemblPlants:Bra004445.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005685	GO:GO:0005730	GO:GO:0005737	GO:GO:0005829	InterPro:IPR000504
InterPro:IPR012677	UniProt:M4CJR1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR10501
PANTHER:PTHR10501:SF40	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002547FDC
SEG:seg	:	:	:	:	:

Description

AT2G47580 (E=3e-087) U1A | U1A (SPLICEOSOMAL PROTEIN U1A); RNA binding / nucleic acid binding / nucleotide binding

Coordinates

chrA05:-:153677..154938

Molecular Weight (calculated)

28610.4 Da

IEP (calculated)

9.936

GRAVY (calculated)

-0.531

Length

258 amino acids

Sequence
(BLAST)

001: MEMMQQEEVA AAAAAANKAG SEVTQNQTIY INNLNEKIKL EEVKKSLKEV FSAYGKIVEV LAFKTLKHKG QAWVVFDNPE SASNAISKMN GYPFYNKPMR
101: IQFAKTKSDV IAKADGTFVP REKRKRHEEK GGKKKKEQHH DSTRVAMPAY PGVYGSAPPL SQVPYSGGGG GVKSNLPEAP APPNNILFVQ HLPHDTTPEI
201: LQNLFDKYHG FKEVRMVAAK PGIAFVEFAD EMQSTVAMHG LEGFTIQQTP MRITYAKK

Best Arabidopsis Sequence Match ( AT2G47580.1 )
(BLAST)

001: MEMQEANQGG GSEVSPNQTI YINNLNEKVK LDELKKSLNA VFSQFGKILE ILAFKTFKHK GQAWVVFDNT ESASTAIAKM NNFPFYDKEM RIQYAKTKSD
101: VVAKADGTFV PREKRKRHEE KGGGKKKKDQ HHDSTQMGMP MNSAYPGVYG AAPPLSQVPY PGGMKPNMPE APAPPNNILF VQNLPHETTP MVLQMLFCQY
201: QGFKEVRMIE AKPGIAFVEF ADEMQSTVAM QGLQGFKIQQ NQMLITYAKK

Arabidopsis Description

U1AU1A [Source:UniProtKB/TrEMBL;Acc:A0A178VZ67]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.