Factsheet for TraesCS1A01G096000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 26228564

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G127700.1	Wheat	nucleus	99.6	99.6
HORVU1Hr1G022420.1	Barley	nucleus	99.6	99.6
TraesCS1D01G105000.1	Wheat	nucleus	99.2	99.2
Zm00001d037602_P001	Maize	extracellular	80.72	79.13
EES17747	Sorghum	nucleus	81.53	78.38
GSMUA_Achr11P...	Banana	nucleus	71.08	75.97
VIT_07s0005g00650.t01	Wine grape	nucleus	70.28	75.43
GSMUA_Achr2P02230_001	Banana	nucleus	75.5	75.2
KRG97081	Soybean	nucleus	66.67	68.88
PGSC0003DMT400081386	Potato	nucleus	69.88	68.77
Solyc09g075200.2.1	Tomato	nucleus	69.48	68.38
KRH68830	Soybean	nucleus	65.86	68.05
AT2G47580.1	Thale cress	nucleus	67.87	67.6
CDY63856	Canola	nucleus	63.86	62.35
Bra004445.1-P	Field mustard	nucleus	63.05	60.85
CDX80118	Canola	nucleus	62.25	60.08
TraesCS4A01G115300.1	Wheat	nucleus	48.59	51.93
CDY39980	Canola	nucleus	33.33	50.92

Protein Annotations

EnsemblPlants:TraesCS1A01G096000.1	EnsemblPlantsGene:TraesCS1A01G096000	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom	PANTHER:PTHR10501
PANTHER:PTHR10501:SF40	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360	SUPFAM:SSF54928
TIGR:cd12246	TIGR:cd12247	MapMan:16.4.1.1.2	:	:	:

Description

No Description!

Coordinates

chr1A:+:91499073..91502229

Molecular Weight (calculated)

27679.7 Da

IEP (calculated)

9.797

GRAVY (calculated)

-0.384

Length

249 amino acids

Sequence
(BLAST)

001: MSGEAAAGGG GEANGVQPNV TIYINNLNEK IKLEALKKSL NAVFSQFGKI IEVLAFKTLK HKGQAWVVFE DVASATEALK RMQDFPFYDK PMKIQYAKTK
101: SDVVAKADGT FVPREKRKRN DEKPEKKQKR EQHHDVNQAG VGMHAYPGAY GAPPLSQLPF GAGPKVMMPE IIVPNNILFV QELPHDATAL MLQMFFCQYP
201: GFKEVRMIEA KPGIAFVEYG DEGQATAAMN LLQGFKIKEN PMRITYAKK

Best Arabidopsis Sequence Match ( AT2G47580.1 )
(BLAST)

001: MEMQEANQGG GSEVSPNQTI YINNLNEKVK LDELKKSLNA VFSQFGKILE ILAFKTFKHK GQAWVVFDNT ESASTAIAKM NNFPFYDKEM RIQYAKTKSD
101: VVAKADGTFV PREKRKRHEE KGGGKKKKDQ HHDSTQMGMP MNSAYPGVYG AAPPLSQVPY PGGMKPNMPE APAPPNNILF VQNLPHETTP MVLQMLFCQY
201: QGFKEVRMIE AKPGIAFVEF ADEMQSTVAM QGLQGFKIQQ NQMLITYAKK

Arabidopsis Description

U1AU1A [Source:UniProtKB/TrEMBL;Acc:A0A178VZ67]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.