Factsheet for VIT_07s0005g00650.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	nucleus	85.34	84.98
GSMUA_Achr2P02230_001	Banana	nucleus	87.5	81.2
KRH68830	Soybean	nucleus	83.62	80.5
KRG97081	Soybean	nucleus	82.76	79.67
Solyc09g075200.2.1	Tomato	nucleus	85.78	78.66
PGSC0003DMT400081386	Potato	nucleus	85.78	78.66
TraesCS1D01G105000.1	Wheat	nucleus	75.86	70.68
TraesCS1B01G127700.1	Wheat	nucleus	75.86	70.68
TraesCS1A01G096000.1	Wheat	nucleus	75.43	70.28
AT2G47580.1	Thale cress	nucleus	75.43	70.0
HORVU1Hr1G022420.1	Barley	nucleus	75.0	69.88
Zm00001d037602_P001	Maize	extracellular	74.57	68.11
EES17747	Sorghum	nucleus	75.0	67.18
CDY63856	Canola	nucleus	70.26	63.92
Bra004445.1-P	Field mustard	nucleus	70.69	63.57
CDX80118	Canola	nucleus	69.83	62.79
VIT_06s0004g07530.t01	Wine grape	nucleus	56.47	55.98
CDY39980	Canola	nucleus	36.21	51.53

Protein Annotations

EntrezGene:100243572	wikigene:100243572	MapMan:16.4.1.1.2	Gene3D:3.30.70.330	ProteinID:CBI36876	ProteinID:CBI36876.3
UniProt:D7U2B0	EMBL:FN596502	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005685
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030619	GO:GO:0035614
InterPro:IPR000504	InterPro:IPR012677	EntrezGene:LOC100243572	wikigene:LOC100243572	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR10501	PANTHER:PTHR10501:SF40	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	TIGR:TC51840	TIGR:TC60290	UniParc:UPI0001BE4B39	ArrayExpress:VIT_07s0005g00650	EnsemblPlantsGene:VIT_07s0005g00650
EnsemblPlants:VIT_07s0005g00650.t01	unigene:Vvi.1622	RefSeq:XP_002270967	RefSeq:XP_002270967.1	SEG:seg	:

Description

No Description!

Coordinates

chr7:-:3311822..3316331

Molecular Weight (calculated)

26088.7 Da

IEP (calculated)

10.130

GRAVY (calculated)

-0.401

Length

232 amino acids

Sequence
(BLAST)

001: MTIYINNLNE KIKLEELKKS LFAVFSQFGK IMEVLAFKTL KHKGQAWVVF EEVSSATNAL RQMQGFPFYD KPMRIQYAKT KSDVIAKADG TFVPRERRRR
101: HDDRAGRKRR EQHDANQAGV GVNPAYGGAY GAAPPLSQIP YLGGAKSAVP EAPAPPNNIL FIQNLPHEAT PMMLQMFFCQ YPGFKEVRMV EAKPGIAFVE
201: YGDEMQSTVA MQGLQGLKIN QQNPMLITYA KK

Best Arabidopsis Sequence Match ( AT2G47580.1 )
(BLAST)

001: MEMQEANQGG GSEVSPNQTI YINNLNEKVK LDELKKSLNA VFSQFGKILE ILAFKTFKHK GQAWVVFDNT ESASTAIAKM NNFPFYDKEM RIQYAKTKSD
101: VVAKADGTFV PREKRKRHEE KGGGKKKKDQ HHDSTQMGMP MNSAYPGVYG AAPPLSQVPY PGGMKPNMPE APAPPNNILF VQNLPHETTP MVLQMLFCQY
201: QGFKEVRMIE AKPGIAFVEF ADEMQSTVAM QGLQGFKIQQ NQMLITYAKK

Arabidopsis Description

U1AU1A [Source:UniProtKB/TrEMBL;Acc:A0A178VZ67]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.