CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY12358
CDY27132

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47580.1	CDY12358	AT1G31750.1	21798944
AT2G47580.1	CDY27132	AT1G31750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80118	Canola	nucleus	94.51	93.41
AT2G47580.1	Thale cress	nucleus	76.86	78.4
VIT_07s0005g00650.t01	Wine grape	nucleus	63.92	70.26
GSMUA_Achr11P...	Banana	nucleus	63.92	69.96
KRG97081	Soybean	nucleus	65.49	69.29
KRH68830	Soybean	nucleus	64.31	68.05
GSMUA_Achr2P02230_001	Banana	nucleus	66.67	68.0
Solyc09g075200.2.1	Tomato	nucleus	66.67	67.19
PGSC0003DMT400081386	Potato	nucleus	66.27	66.8
HORVU1Hr1G022420.1	Barley	nucleus	62.75	64.26
TraesCS1B01G127700.1	Wheat	nucleus	62.75	64.26
TraesCS1A01G096000.1	Wheat	nucleus	62.35	63.86
TraesCS1D01G105000.1	Wheat	nucleus	62.35	63.86
Zm00001d037602_P001	Maize	extracellular	60.0	60.24
EES17747	Sorghum	nucleus	60.39	59.46
CDY39980	Canola	nucleus	37.25	58.28
CDY10721	Canola	nucleus	46.67	52.19
CDY02052	Canola	nucleus	46.27	51.75

Protein Annotations

MapMan:16.4.1.1.2	Gene3D:3.30.70.330	GO:A0A078JCR2	UniProt:A0A078JCR2	EnsemblPlants:CDY63856	ProteinID:CDY63856
ProteinID:CDY63856.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0017069
EnsemblPlantsGene:GSBRNA2T00039683001	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR10501	PANTHER:PTHR10501:SF40	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI0004EBA31A	SEG:seg	:	:	:	:

Description

BnaC04g51850DBnaC04g51850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JCR2]

Coordinates

chrLK034359:+:19269..21019

Molecular Weight (calculated)

28405.2 Da

IEP (calculated)

9.902

GRAVY (calculated)

-0.540

Length

255 amino acids

Sequence
(BLAST)

001: MEMMMQEEAA AAANKAGSEV TPNQTIYINN LNEKVKLDEL KKSLNTVFSR FGKIVEVLAF KTLKHKGQAW VVFDNPESAS NAISEMNGYR FYDKPMRIQF
101: AKTKSDVIAK ADGTFVPREK RKRQEEKGGK KKKEQHHDST RMAMPAYPGV YGSAPPLSQV PYPGGGGGVK SNLPEAPAPP NNILFVQHLP HDTTPEILQA
201: LFDKYHGFKE VRMVAAKPGI AFVEFADEMQ STVAMHGLEG FTIQQTPMRI TYAKK

Best Arabidopsis Sequence Match ( AT2G47580.1 )
(BLAST)

001: MEMQEANQGG GSEVSPNQTI YINNLNEKVK LDELKKSLNA VFSQFGKILE ILAFKTFKHK GQAWVVFDNT ESASTAIAKM NNFPFYDKEM RIQYAKTKSD
101: VVAKADGTFV PREKRKRHEE KGGGKKKKDQ HHDSTQMGMP MNSAYPGVYG AAPPLSQVPY PGGMKPNMPE APAPPNNILF VQNLPHETTP MVLQMLFCQY
201: QGFKEVRMIE AKPGIAFVEF ADEMQSTVAM QGLQGFKIQQ NQMLITYAKK

Arabidopsis Description

U1AU1A [Source:UniProtKB/TrEMBL;Acc:A0A178VZ67]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.