Factsheet for Solyc09g075200.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400081386	Potato	nucleus	98.02	98.02
VIT_07s0005g00650.t01	Wine grape	nucleus	78.66	85.78
KRH68830	Soybean	nucleus	77.87	81.74
KRG97081	Soybean	nucleus	77.47	81.33
GSMUA_Achr11P...	Banana	nucleus	73.52	79.83
GSMUA_Achr2P02230_001	Banana	nucleus	75.89	76.8
AT2G47580.1	Thale cress	nucleus	73.52	74.4
TraesCS1A01G096000.1	Wheat	nucleus	68.38	69.48
TraesCS1D01G105000.1	Wheat	nucleus	67.98	69.08
TraesCS1B01G127700.1	Wheat	nucleus	67.98	69.08
HORVU1Hr1G022420.1	Barley	nucleus	67.98	69.08
EES17747	Sorghum	nucleus	69.57	67.95
Zm00001d037602_P001	Maize	extracellular	67.98	67.72
CDY63856	Canola	nucleus	67.19	66.67
Bra004445.1-P	Field mustard	nucleus	67.19	65.89
CDX80118	Canola	nucleus	66.4	65.12
Solyc06g082360.2.1	Tomato	nucleus	52.17	56.65
CDY39980	Canola	nucleus	34.39	53.37

Protein Annotations

MapMan:16.4.1.1.2	Gene3D:3.30.70.330	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005685
GO:GO:0005730	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0030619	GO:GO:0035614	InterPro:IPR000504	InterPro:IPR012677	UniProt:K4CV97
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR10501	PANTHER:PTHR10501:SF40	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	EnsemblPlantsGene:Solyc09g075200.2	EnsemblPlants:Solyc09g075200.2.1	UniParc:UPI000276B968
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr9:-:66972819..66978558

Molecular Weight (calculated)

28030.9 Da

IEP (calculated)

9.981

GRAVY (calculated)

-0.481

Length

253 amino acids

Sequence
(BLAST)

001: MAEANQNTNP NPAPSGGEVP PNVTIYINNL NEKIKLEELK KSMHAVFSQF GKILEVLAFK TLKHKGQAWV VFDEVSSASN ALRQMQGFPF YDKPMRIQYA
101: KTKSDVVAKA DGTFVPREKR KRHEDKGRKK KDQQDANQAG MGRNPAYAGA YGAAPPFSQI PYMGGAKAAV PEAPAPPNSI LFVQNLPHQS TPMMLQMLFC
201: QYPGFKEVRM VEAKPGIAFI EYGDEMQSTV AMQALQGFKI TADNPMLITY AKK

Best Arabidopsis Sequence Match ( AT2G47580.1 )
(BLAST)

001: MEMQEANQGG GSEVSPNQTI YINNLNEKVK LDELKKSLNA VFSQFGKILE ILAFKTFKHK GQAWVVFDNT ESASTAIAKM NNFPFYDKEM RIQYAKTKSD
101: VVAKADGTFV PREKRKRHEE KGGGKKKKDQ HHDSTQMGMP MNSAYPGVYG AAPPLSQVPY PGGMKPNMPE APAPPNNILF VQNLPHETTP MVLQMLFCQY
201: QGFKEVRMIE AKPGIAFVEF ADEMQSTVAM QGLQGFKIQQ NQMLITYAKK

Arabidopsis Description

U1AU1A [Source:UniProtKB/TrEMBL;Acc:A0A178VZ67]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.