CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68830	Soybean	nucleus	98.76	98.76
VIT_07s0005g00650.t01	Wine grape	nucleus	79.67	82.76
GSMUA_Achr11P...	Banana	nucleus	78.42	81.12
PGSC0003DMT400081386	Potato	nucleus	82.57	78.66
GSMUA_Achr2P02230_001	Banana	nucleus	81.33	78.4
Solyc09g075200.2.1	Tomato	nucleus	81.33	77.47
AT2G47580.1	Thale cress	nucleus	73.44	70.8
HORVU1Hr1G022420.1	Barley	nucleus	69.29	67.07
TraesCS1D01G105000.1	Wheat	nucleus	69.29	67.07
TraesCS1B01G127700.1	Wheat	nucleus	69.29	67.07
Zm00001d037602_P001	Maize	extracellular	70.54	66.93
TraesCS1A01G096000.1	Wheat	nucleus	68.88	66.67
CDY63856	Canola	nucleus	69.29	65.49
EES17747	Sorghum	nucleus	70.12	65.25
Bra004445.1-P	Field mustard	nucleus	68.46	63.95
CDX80118	Canola	nucleus	68.46	63.95
KRH72767	Soybean	nucleus	55.6	57.76
KRH17128	Soybean	nucleus	55.6	57.76
CDY39980	Canola	nucleus	35.27	52.15

Protein Annotations

EntrezGene:100777062	MapMan:16.4.1.1.2	Gene3D:3.30.70.330	EMBL:ACUP02012176	EnsemblPlantsGene:GLYMA_19G250800	GO:GO:0000398
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005685	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0030619	GO:GO:0035614	UniProt:I1NCF8	InterPro:IPR000504	InterPro:IPR012677
EnsemblPlants:KRG97081	ProteinID:KRG97081	ProteinID:KRG97081.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR10501	PANTHER:PTHR10501:SF40	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI000233ED3B	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr19:+:49675047..49678575

Molecular Weight (calculated)

26936.7 Da

IEP (calculated)

9.979

GRAVY (calculated)

-0.432

Length

241 amino acids

Sequence
(BLAST)

001: MSEVNATPEI PQNNTIYINN LNEKIKIDEL KKSLNAVFTQ FGKILEVLAF KTLKHKGQAW VVFEDASSAS NALRQMQGFP FYDKPMRIQY AKTKSDIIAK
101: ADGTFVPREK RKRHDEKAKK RKDQHDSNLA GMGLNPAYAG AYGAAPAIAY PGGAKSMVPE APAPPNNILF IQNLPNDSTP MMLQMLFLQY PGFKEVRMVE
201: TKPGIAFVEY GDEMQSTVAM QTLQGFKITP QNPMLITYAK K

Best Arabidopsis Sequence Match ( AT2G47580.1 )
(BLAST)

001: MEMQEANQGG GSEVSPNQTI YINNLNEKVK LDELKKSLNA VFSQFGKILE ILAFKTFKHK GQAWVVFDNT ESASTAIAKM NNFPFYDKEM RIQYAKTKSD
101: VVAKADGTFV PREKRKRHEE KGGGKKKKDQ HHDSTQMGMP MNSAYPGVYG AAPPLSQVPY PGGMKPNMPE APAPPNNILF VQNLPHETTP MVLQMLFCQY
201: QGFKEVRMIE AKPGIAFVEF ADEMQSTVAM QGLQGFKIQQ NQMLITYAKK

Arabidopsis Description

U1AU1A [Source:UniProtKB/TrEMBL;Acc:A0A178VZ67]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.