CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d037602_P001	Maize	extracellular	90.35	92.13
TraesCS1D01G105000.1	Wheat	nucleus	78.38	81.53
TraesCS1A01G096000.1	Wheat	nucleus	78.38	81.53
TraesCS1B01G127700.1	Wheat	nucleus	77.99	81.12
HORVU1Hr1G022420.1	Barley	nucleus	77.99	81.12
GSMUA_Achr11P...	Banana	nucleus	70.27	78.11
GSMUA_Achr2P02230_001	Banana	nucleus	73.75	76.4
VIT_07s0005g00650.t01	Wine grape	nucleus	67.18	75.0
KRG97081	Soybean	nucleus	65.25	70.12
KRH68830	Soybean	nucleus	64.86	69.71
PGSC0003DMT400081386	Potato	nucleus	67.95	69.57
Solyc09g075200.2.1	Tomato	nucleus	67.95	69.57
AT2G47580.1	Thale cress	nucleus	66.41	68.8
CDY63856	Canola	nucleus	59.46	60.39
Bra004445.1-P	Field mustard	nucleus	59.07	59.3
CDX80118	Canola	nucleus	58.3	58.53
EER92401	Sorghum	nucleus	48.65	54.08
CDY39980	Canola	nucleus	30.5	48.47

Protein Annotations

MapMan:16.4.1.1.2	Gene3D:3.30.70.330	EntrezGene:8076009	UniProt:C5Z0J1	EnsemblPlants:EES17747	ProteinID:EES17747
ProteinID:EES17747.1	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005685	GO:GO:0005730
GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0030619	GO:GO:0035614	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR10501	PANTHER:PTHR10501:SF40	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
EnsemblPlantsGene:SORBI_3009G050100	SUPFAM:SSF54928	unigene:Sbi.15179	UniParc:UPI0001A887DC	RefSeq:XP_002439317.1	SEG:seg

Description

hypothetical protein

Coordinates

chr9:+:5006809..5010173

Molecular Weight (calculated)

28581.7 Da

IEP (calculated)

9.710

GRAVY (calculated)

-0.350

Length

259 amino acids

Sequence
(BLAST)

001: MSGEAAAAAV GGGGGGGGEG ETNGVQPNVT IYINNLNEKI KLEELKKSLT AVFSQFGKIL DVLAFKTLKH KGQAWVVFED VASATEALKR MQGFPFYDKT
101: MRIQYAKTKS DIVAKADGTF VPRERRKRVD EKPEKKQKRE HHHDASQIGM GVNAYPGVYG APQLTQIPIA GGQRVIMPEI IVPNNILFVQ NLPHETTPMM
201: LQMLFCQYPG FKEVRMVEAK PGIAFVEYGD EGQATAAMNN LQSFKITKEN QMVITYAKK

Best Arabidopsis Sequence Match ( AT2G47580.1 )
(BLAST)

001: MEMQEANQGG GSEVSPNQTI YINNLNEKVK LDELKKSLNA VFSQFGKILE ILAFKTFKHK GQAWVVFDNT ESASTAIAKM NNFPFYDKEM RIQYAKTKSD
101: VVAKADGTFV PREKRKRHEE KGGGKKKKDQ HHDSTQMGMP MNSAYPGVYG AAPPLSQVPY PGGMKPNMPE APAPPNNILF VQNLPHETTP MVLQMLFCQY
201: QGFKEVRMIE AKPGIAFVEF ADEMQSTVAM QGLQGFKIQQ NQMLITYAKK

Arabidopsis Description

U1AU1A [Source:UniProtKB/TrEMBL;Acc:A0A178VZ67]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.