CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89414

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30260.1	EER89414	AT1G49590.1	23524848

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047699_P001	Maize	extracellular, nucleus	98.28	98.28
Zm00001d028804_P001	Maize	nucleus	96.57	96.57
TraesCS4D01G190200.1	Wheat	nucleus	86.27	86.27
TraesCS4B01G188900.1	Wheat	nucleus	86.27	86.27
HORVU4Hr1G055040.1	Barley	nucleus	86.27	86.27
TraesCS4A01G115300.1	Wheat	nucleus	85.84	85.84
VIT_06s0004g07530.t01	Wine grape	nucleus	73.39	73.08
GSMUA_Achr3P09930_001	Banana	nucleus	70.82	70.21
GSMUA_Achr10P...	Banana	nucleus	70.39	69.2
PGSC0003DMT400078262	Potato	nucleus	68.24	68.53
Solyc06g082360.2.1	Tomato	nucleus	68.24	68.24
KRH17128	Soybean	nucleus	67.81	68.1
KRH72767	Soybean	nucleus	66.95	67.24
AT2G30260.1	Thale cress	nucleus	64.38	64.66
AT1G06960.1	Thale cress	nucleus	63.52	64.63
Bra018324.1-P	Field mustard	nucleus	62.23	63.6
CDY10721	Canola	nucleus	61.8	63.16
CDY02052	Canola	nucleus	61.37	62.72
EES17747	Sorghum	nucleus	54.08	48.65

Protein Annotations

MapMan:16.4.1.2.2	Gene3D:3.30.70.330	EntrezGene:8081113	UniProt:C5WNF2	ncoils:Coil	EnsemblPlants:EER92401
ProteinID:EER92401	ProteinID:EER92401.1	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005686
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0035614	InterPro:IPR000504
InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR10501	PANTHER:PTHR10501:SF32
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	EnsemblPlantsGene:SORBI_3001G402300	SUPFAM:SSF54928	unigene:Sbi.7134
UniParc:UPI0001A82B9E	RefSeq:XP_002465403.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:68785271..68790307

Molecular Weight (calculated)

26200.4 Da

IEP (calculated)

9.804

GRAVY (calculated)

-0.621

Length

233 amino acids

Sequence
(BLAST)

001: MLSGDIPPNQ TIYLNNLNEK VKKEELKRSL YALCSQYGRI LDVVALKTQK LRGQAWVVFS EITAATNAFR GLQDFDFYGK KMRVQYAKTK SDCIAKEDGT
101: YAPKEKRKKQ EEKAAEKKRR AEEAQQAGPN ASAAQSNGTG YQASRLGKVS QEPPAPPNNI LFIQNLPDQT TSMMLQILFQ QYPGFREVRM IEAKPGIAFV
201: EFEDDSQSMV AMQALQGFKI TPENPMAISY AKK

Best Arabidopsis Sequence Match ( AT2G30260.1 )
(BLAST)

001: MLTADIPPNQ SIYIQNLNER IKKEELKRSL YCLFSQFGRI LDVVALKTPK LRGQAWVTFS EVTAAGHAVR QMQNFPFYDK PMRLQYAKAK SDCLAKAEGT
101: FVPKDKKRKQ EEKVERKRED SQRPNTANGP SANGPSANNG VPAPSFQPSG QETMPPNNIL FIQNLPHETT SMMLQLLFEQ YPGFKEIRMI DAKPGIAFVE
201: YEDDVQASIA MQPLQGFKIT PQNPMVISFA KK

Arabidopsis Description

U2B''U2 small nuclear ribonucleoprotein B'' [Source:UniProtKB/Swiss-Prot;Acc:O22922]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.