Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU7Hr1G035910.4 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G30260.1 | HORVU7Hr1G035910.4 | AT1G49590.1 | 23524848 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G190200.1 | Wheat | nucleus | 98.71 | 98.71 |
| TraesCS4B01G188900.1 | Wheat | nucleus | 98.71 | 98.71 |
| TraesCS4A01G115300.1 | Wheat | nucleus | 98.28 | 98.28 |
| Zm00001d028804_P001 | Maize | nucleus | 86.27 | 86.27 |
| EER92401 | Sorghum | nucleus | 86.27 | 86.27 |
| Zm00001d047699_P001 | Maize | extracellular, nucleus | 85.84 | 85.84 |
| VIT_06s0004g07530.t01 | Wine grape | nucleus | 71.24 | 70.94 |
| PGSC0003DMT400078262 | Potato | nucleus | 66.09 | 66.38 |
| KRH72767 | Soybean | nucleus | 65.24 | 65.52 |
| GSMUA_Achr10P... | Banana | nucleus | 66.52 | 65.4 |
| Solyc06g082360.2.1 | Tomato | nucleus | 65.24 | 65.24 |
| GSMUA_Achr3P09930_001 | Banana | nucleus | 65.67 | 65.11 |
| KRH17128 | Soybean | nucleus | 64.81 | 65.09 |
| AT1G06960.1 | Thale cress | nucleus | 61.8 | 62.88 |
| AT2G30260.1 | Thale cress | nucleus | 61.37 | 61.64 |
| Bra018324.1-P | Field mustard | nucleus | 59.66 | 60.96 |
| CDY10721 | Canola | nucleus | 59.23 | 60.53 |
| CDY02052 | Canola | nucleus | 58.8 | 60.09 |
| HORVU1Hr1G022420.1 | Barley | nucleus | 51.93 | 48.59 |
Protein Annotations
| EMBL:AK364819 | EnsemblPlants:HORVU4Hr1G055040.1 | EnsemblPlantsGene:HORVU4Hr1G055040 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PANTHER:PTHR10501 | PANTHER:PTHR10501:SF32 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0002006922 | UniProt:F2DLQ1 | MapMan:16.4.1.2.2 | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DLQ1]
Coordinates
chrchr4H:-:461455743..461461235
Molecular Weight (calculated)
26200.3 Da
IEP (calculated)
9.894
GRAVY (calculated)
-0.681
Length
233 amino acids
Sequence
(BLAST)
(BLAST)
001: MLSGDVPPNQ TVYFKNLNEK VKKEELKRSL YALCSQYGRI VDVVALKTHK LRGQAWVAFS EITAATNAFR GLQDFDFYGK KMRVQYAKTK SDCFAKADGS
101: YAPKEKRKKQ EEKAAEKKRR TEDGQQPGAN APVAPSNGTG HQPSRFAKPP QEPAAPPNNI LFLQNLPDQT TSVMLQILFQ QYPGFREVRM IEAKPGIAFV
201: EYEDENQSMV AMEALQGFKI SPENPMAISY AKK
101: YAPKEKRKKQ EEKAAEKKRR TEDGQQPGAN APVAPSNGTG HQPSRFAKPP QEPAAPPNNI LFLQNLPDQT TSVMLQILFQ QYPGFREVRM IEAKPGIAFV
201: EYEDENQSMV AMEALQGFKI SPENPMAISY AKK
001: MLTADIPPNQ SIYIQNLNER IKKEELKRSL YCLFSQFGRI LDVVALKTPK LRGQAWVTFS EVTAAGHAVR QMQNFPFYDK PMRLQYAKAK SDCLAKAEGT
101: FVPKDKKRKQ EEKVERKRED SQRPNTANGP SANGPSANNG VPAPSFQPSG QETMPPNNIL FIQNLPHETT SMMLQLLFEQ YPGFKEIRMI DAKPGIAFVE
201: YEDDVQASIA MQPLQGFKIT PQNPMVISFA KK
101: FVPKDKKRKQ EEKVERKRED SQRPNTANGP SANGPSANNG VPAPSFQPSG QETMPPNNIL FIQNLPHETT SMMLQLLFEQ YPGFKEIRMI DAKPGIAFVE
201: YEDDVQASIA MQPLQGFKIT PQNPMVISFA KK
Arabidopsis Description
U2B''U2 small nuclear ribonucleoprotein B'' [Source:UniProtKB/Swiss-Prot;Acc:O22922]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.