Factsheet for Bra018324.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra018814.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30260.1	Bra018814.1-P	AT1G49590.1	23524848

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10721	Canola	nucleus	98.68	98.68
AT2G30260.1	Thale cress	nucleus	80.26	78.88
PGSC0003DMT400078262	Potato	nucleus	71.49	70.26
KRH72767	Soybean	nucleus	70.61	69.4
KRH17128	Soybean	nucleus	70.18	68.97
VIT_06s0004g07530.t01	Wine grape	nucleus	70.61	68.8
Solyc06g082360.2.1	Tomato	nucleus	69.74	68.24
GSMUA_Achr3P09930_001	Banana	nucleus	65.35	63.4
Zm00001d047699_P001	Maize	extracellular, nucleus	64.04	62.66
EER92401	Sorghum	nucleus	63.6	62.23
Zm00001d028804_P001	Maize	nucleus	63.6	62.23
GSMUA_Achr10P...	Banana	nucleus	63.6	61.18
HORVU4Hr1G055040.1	Barley	nucleus	60.96	59.66
TraesCS4B01G188900.1	Wheat	nucleus	60.09	58.8
TraesCS4D01G190200.1	Wheat	nucleus	60.09	58.8
TraesCS4A01G115300.1	Wheat	nucleus	59.65	58.37
Bra004445.1-P	Field mustard	nucleus	51.75	45.74

Protein Annotations

MapMan:16.4.1.2.2	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra018324	EnsemblPlants:Bra018324.1	EnsemblPlants:Bra018324.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0005686	GO:GO:0005737	GO:GO:0015030	InterPro:IPR000504
InterPro:IPR012677	UniProt:M4DP83	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR10501
PANTHER:PTHR10501:SF32	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002547BA3
SEG:seg	:	:	:	:	:

Description

AT2G30260 (E=1e-094) U2B'' | U2B'' (U2 small nuclear ribonucleoprotein B); RNA binding / nucleic acid binding / nucleotide binding

Coordinates

chrA05:+:7465404..7466881

Molecular Weight (calculated)

25969.4 Da

IEP (calculated)

10.196

GRAVY (calculated)

-0.603

Length

228 amino acids

Sequence
(BLAST)

001: MLTADIPPNQ SIYIKNLNER IKKEELKRSL YCLFSQFGRI LDVVALKTPK LRGQAWVAFS DVTAATNAVR QMQNFPFYDK PMRIQFAKEK SDCIAKEEGT
101: FVPKDKKRKK EEKAERKREE TQRPNTANAP TPQNGAPPPS SFKPSGQDAM PPNNILFIQN LPHDTTTAML EFLFRQYPGF KEIRMVAAKP GIAFAEFEDD
201: AKSSMAMQGL QDFKITPQFP MLISFAKK

Best Arabidopsis Sequence Match ( AT2G30260.1 )
(BLAST)

001: MLTADIPPNQ SIYIQNLNER IKKEELKRSL YCLFSQFGRI LDVVALKTPK LRGQAWVTFS EVTAAGHAVR QMQNFPFYDK PMRLQYAKAK SDCLAKAEGT
101: FVPKDKKRKQ EEKVERKRED SQRPNTANGP SANGPSANNG VPAPSFQPSG QETMPPNNIL FIQNLPHETT SMMLQLLFEQ YPGFKEIRMI DAKPGIAFVE
201: YEDDVQASIA MQPLQGFKIT PQNPMVISFA KK

Arabidopsis Description

U2B''U2 small nuclear ribonucleoprotein B'' [Source:UniProtKB/Swiss-Prot;Acc:O22922]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.