Factsheet for PGSC0003DMT400078262

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400066376

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30260.1	PGSC0003DMT400066376	AT1G49590.1	23524848

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g082360.2.1	Tomato	nucleus	96.98	96.57
VIT_06s0004g07530.t01	Wine grape	nucleus	79.31	78.63
KRH17128	Soybean	nucleus	75.86	75.86
KRH72767	Soybean	nucleus	75.0	75.0
AT1G06960.1	Thale cress	nucleus	71.55	72.49
CDY10721	Canola	nucleus	71.12	72.37
GSMUA_Achr3P09930_001	Banana	nucleus	73.28	72.34
AT2G30260.1	Thale cress	nucleus	71.55	71.55
Bra018324.1-P	Field mustard	nucleus	70.26	71.49
CDY02052	Canola	nucleus	69.83	71.05
GSMUA_Achr10P...	Banana	nucleus	72.41	70.89
EER92401	Sorghum	nucleus	68.53	68.24
Zm00001d047699_P001	Maize	extracellular, nucleus	68.1	67.81
Zm00001d028804_P001	Maize	nucleus	67.67	67.38
HORVU4Hr1G055040.1	Barley	nucleus	66.38	66.09
TraesCS4B01G188900.1	Wheat	nucleus	65.95	65.67
TraesCS4D01G190200.1	Wheat	nucleus	65.95	65.67
TraesCS4A01G115300.1	Wheat	nucleus	65.52	65.24
PGSC0003DMT400081386	Potato	nucleus	58.19	53.36

Protein Annotations

EntrezGene:102600261	MapMan:16.4.1.2.2	Gene3D:3.30.70.330	ProteinID:AAA33847	ProteinID:AAA33847.1	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677
UniProt:M1CZR5	EMBL:M72892	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	EnsemblPlantsGene:PGSC0003DMG400030459	PGSC:PGSC0003DMG400030459
EnsemblPlants:PGSC0003DMT400078262	PFscan:PS50102	PANTHER:PTHR10501	PANTHER:PTHR10501:SF32	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002952191	RefSeq:XP_006350871.1	SEG:seg	:

Description

Spliceosomal protein [Source:PGSC_GENE;Acc:PGSC0003DMG400030459]

Coordinates

chr6:-:57521113..57526091

Molecular Weight (calculated)

26090.4 Da

IEP (calculated)

9.931

GRAVY (calculated)

-0.602

Length

232 amino acids

Sequence
(BLAST)

001: MMLTGDIPPN QTIYIKNLNE KIKKEELKRS LYCLFSQYGR IVDIVALKTP KLRGQSWVVF SEVTAASNAV RQMQNFPFYD KPMRIQYAKS KSDCIAKAEG
101: TYDKKKKQDE KVEKRKRTEE TPQTGAANGP RADSNGGGPA AASRQGKPSA QDIAEPNNIL FIQNLPHETT SMMLEVLFKQ YPGFREVRMI EAKPGIAFVE
201: FDDDVQSSVA MQALQGFKIT PQNPMAITYA KK

Best Arabidopsis Sequence Match ( AT2G30260.1 )
(BLAST)

001: MLTADIPPNQ SIYIQNLNER IKKEELKRSL YCLFSQFGRI LDVVALKTPK LRGQAWVTFS EVTAAGHAVR QMQNFPFYDK PMRLQYAKAK SDCLAKAEGT
101: FVPKDKKRKQ EEKVERKRED SQRPNTANGP SANGPSANNG VPAPSFQPSG QETMPPNNIL FIQNLPHETT SMMLQLLFEQ YPGFKEIRMI DAKPGIAFVE
201: YEDDVQASIA MQPLQGFKIT PQNPMVISFA KK

Arabidopsis Description

U2B''U2 small nuclear ribonucleoprotein B'' [Source:UniProtKB/Swiss-Prot;Acc:O22922]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.