Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
21132161
endoplasmic reticulum: 27224218 nucleus: 27291164 nucleus: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G30260.1 | KRH33288 | AT1G49590.1 | 23524848 |
| AT2G30260.1 | KRH71626 | AT1G49590.1 | 23524848 |
| AT2G30260.1 | KRH76336 | AT1G49590.1 | 23524848 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH17128 | Soybean | nucleus | 97.41 | 97.41 |
| VIT_06s0004g07530.t01 | Wine grape | nucleus | 80.6 | 79.91 |
| PGSC0003DMT400078262 | Potato | nucleus | 75.0 | 75.0 |
| Solyc06g082360.2.1 | Tomato | nucleus | 74.14 | 73.82 |
| GSMUA_Achr3P09930_001 | Banana | nucleus | 74.14 | 73.19 |
| AT1G06960.1 | Thale cress | nucleus | 71.55 | 72.49 |
| CDY10721 | Canola | nucleus | 70.26 | 71.49 |
| CDY02052 | Canola | nucleus | 69.83 | 71.05 |
| GSMUA_Achr10P... | Banana | nucleus | 72.41 | 70.89 |
| AT2G30260.1 | Thale cress | nucleus | 70.69 | 70.69 |
| Bra018324.1-P | Field mustard | nucleus | 69.4 | 70.61 |
| EER92401 | Sorghum | nucleus | 67.24 | 66.95 |
| Zm00001d028804_P001 | Maize | nucleus | 66.81 | 66.52 |
| Zm00001d047699_P001 | Maize | extracellular, nucleus | 66.81 | 66.52 |
| HORVU4Hr1G055040.1 | Barley | nucleus | 65.52 | 65.24 |
| TraesCS4B01G188900.1 | Wheat | nucleus | 64.66 | 64.38 |
| TraesCS4D01G190200.1 | Wheat | nucleus | 64.66 | 64.38 |
| TraesCS4A01G115300.1 | Wheat | nucleus | 64.22 | 63.95 |
| KRG97081 | Soybean | nucleus | 57.76 | 55.6 |
| KRH68830 | Soybean | nucleus | 56.47 | 54.36 |
Protein Annotations
| MapMan:16.4.1.2.2 | Gene3D:3.30.70.330 | EMBL:ACUP02001240 | ncoils:Coil | EnsemblPlantsGene:GLYMA_02G232800 | GO:GO:0000398 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005686 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0035614 | UniProt:I1JHJ0 | InterPro:IPR000504 | InterPro:IPR012677 | EnsemblPlants:KRH72767 |
| ProteinID:KRH72767 | ProteinID:KRH72767.1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR10501 |
| PANTHER:PTHR10501:SF32 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI00023BC7D6 |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr2:-:42021405..42024826
Molecular Weight (calculated)
26189.5 Da
IEP (calculated)
9.686
GRAVY (calculated)
-0.558
Length
232 amino acids
Sequence
(BLAST)
(BLAST)
001: MLSGDIPPNQ TIYIKNLNEK VKKDELKRSL YCLFSQYGRI LDVIALKTPK LRGQAWVCFS EVTAASNAVR QMQNFPFYDK PMRIHYAKTK SDCIAKEEGS
101: FVPREKKKKQ EEKAERKRRV EEAQQSGVAN GTHSASNGGP TASFRQGPGA QEAAAPNNIL FIENLPHETT GRMLEMLFEQ YPGFKEVRLI EAKPGIAFVD
201: FEDEVQSSMA MQALHGFKIT PQNPMIITFA KK
101: FVPREKKKKQ EEKAERKRRV EEAQQSGVAN GTHSASNGGP TASFRQGPGA QEAAAPNNIL FIENLPHETT GRMLEMLFEQ YPGFKEVRLI EAKPGIAFVD
201: FEDEVQSSMA MQALHGFKIT PQNPMIITFA KK
001: MLTADIPPNQ SIYIQNLNER IKKEELKRSL YCLFSQFGRI LDVVALKTPK LRGQAWVTFS EVTAAGHAVR QMQNFPFYDK PMRLQYAKAK SDCLAKAEGT
101: FVPKDKKRKQ EEKVERKRED SQRPNTANGP SANGPSANNG VPAPSFQPSG QETMPPNNIL FIQNLPHETT SMMLQLLFEQ YPGFKEIRMI DAKPGIAFVE
201: YEDDVQASIA MQPLQGFKIT PQNPMVISFA KK
101: FVPKDKKRKQ EEKVERKRED SQRPNTANGP SANGPSANNG VPAPSFQPSG QETMPPNNIL FIQNLPHETT SMMLQLLFEQ YPGFKEIRMI DAKPGIAFVE
201: YEDDVQASIA MQPLQGFKIT PQNPMVISFA KK
Arabidopsis Description
U2B''U2 small nuclear ribonucleoprotein B'' [Source:UniProtKB/Swiss-Prot;Acc:O22922]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.