Factsheet for TraesCS4D01G190200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 26228564

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS7A01G173200.1
TraesCS7B01G078500.1
TraesCS7D01G174600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30260.1	TraesCS7A01G173200.1	AT1G49590.1	23524848
AT2G30260.1	TraesCS7B01G078500.1	AT1G49590.1	23524848
AT2G30260.1	TraesCS7D01G174600.1	AT1G49590.1	23524848

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G188900.1	Wheat	nucleus	100.0	100.0
TraesCS4A01G115300.1	Wheat	nucleus	99.57	99.57
HORVU4Hr1G055040.1	Barley	nucleus	98.71	98.71
Zm00001d028804_P001	Maize	nucleus	86.27	86.27
EER92401	Sorghum	nucleus	86.27	86.27
Zm00001d047699_P001	Maize	extracellular, nucleus	85.84	85.84
VIT_06s0004g07530.t01	Wine grape	nucleus	70.82	70.51
PGSC0003DMT400078262	Potato	nucleus	65.67	65.95
GSMUA_Achr10P...	Banana	nucleus	66.52	65.4
GSMUA_Achr3P09930_001	Banana	nucleus	65.67	65.11
Solyc06g082360.2.1	Tomato	nucleus	64.81	64.81
KRH72767	Soybean	nucleus	64.38	64.66
KRH17128	Soybean	nucleus	63.95	64.22
AT1G06960.1	Thale cress	nucleus	61.37	62.45
AT2G30260.1	Thale cress	nucleus	61.37	61.64
Bra018324.1-P	Field mustard	nucleus	58.8	60.09
CDY10721	Canola	nucleus	58.37	59.65
CDY02052	Canola	nucleus	57.94	59.21
TraesCS1D01G105000.1	Wheat	nucleus	51.93	48.59

Protein Annotations

EnsemblPlants:TraesCS4D01G190200.1	EnsemblPlantsGene:TraesCS4D01G190200	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom	PANTHER:PTHR10501
PANTHER:PTHR10501:SF32	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360	SUPFAM:SSF54928
TIGR:cd12246	TIGR:cd12247	MapMan:16.4.1.2.2	:	:	:

Description

No Description!

Coordinates

chr4D:+:333060460..333066755

Molecular Weight (calculated)

26278.5 Da

IEP (calculated)

9.904

GRAVY (calculated)

-0.702

Length

233 amino acids

Sequence
(BLAST)

001: MLSGDVPPNQ TVYFRNLNEK VKKEELKRSL YALCSQYGRI VDVVALKTHK LRGQAWVAFS EITAATNAFR GLQDFDFYGK KMRVQYAKTK SDCFAKADGS
101: YAPKEKRKKQ EEKAAEKKRR TEDGQQPGAN APVAPSNGTG HQPSRFAKPP QEPAAPPNNI LFLQNMPDQT TSMMLQILFQ QYPGFREVRM IEAKPGIAFV
201: EYEDENQSMV AMEALQGFKI SPENPMAISY AKK

Best Arabidopsis Sequence Match ( AT2G30260.1 )
(BLAST)

001: MLTADIPPNQ SIYIQNLNER IKKEELKRSL YCLFSQFGRI LDVVALKTPK LRGQAWVTFS EVTAAGHAVR QMQNFPFYDK PMRLQYAKAK SDCLAKAEGT
101: FVPKDKKRKQ EEKVERKRED SQRPNTANGP SANGPSANNG VPAPSFQPSG QETMPPNNIL FIQNLPHETT SMMLQLLFEQ YPGFKEIRMI DAKPGIAFVE
201: YEDDVQASIA MQPLQGFKIT PQNPMVISFA KK

Arabidopsis Description

U2B''U2 small nuclear ribonucleoprotein B'' [Source:UniProtKB/Swiss-Prot;Acc:O22922]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.