Factsheet for GSMUA_Achr3P09930_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30260.1	GSMUA_Achr10P...	AT1G49590.1	23524848

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	91.49	90.72
VIT_06s0004g07530.t01	Wine grape	nucleus	81.28	81.62
KRH72767	Soybean	nucleus	73.19	74.14
KRH17128	Soybean	nucleus	73.19	74.14
PGSC0003DMT400078262	Potato	nucleus	72.34	73.28
Solyc06g082360.2.1	Tomato	nucleus	71.49	72.1
Zm00001d047699_P001	Maize	extracellular, nucleus	70.21	70.82
EER92401	Sorghum	nucleus	70.21	70.82
Zm00001d028804_P001	Maize	nucleus	69.79	70.39
AT1G06960.1	Thale cress	nucleus	68.51	70.31
AT2G30260.1	Thale cress	nucleus	68.51	69.4
CDY10721	Canola	nucleus	63.83	65.79
HORVU4Hr1G055040.1	Barley	nucleus	65.11	65.67
TraesCS4A01G115300.1	Wheat	nucleus	65.11	65.67
TraesCS4B01G188900.1	Wheat	nucleus	65.11	65.67
TraesCS4D01G190200.1	Wheat	nucleus	65.11	65.67
Bra018324.1-P	Field mustard	nucleus	63.4	65.35
CDY02052	Canola	nucleus	62.98	64.91
GSMUA_Achr11P...	Banana	nucleus	56.17	56.65
GSMUA_Achr2P02230_001	Banana	nucleus	59.15	55.6

Protein Annotations

MapMan:16.4.1.2.2	Gene3D:3.30.70.330	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	EnsemblPlantsGene:GSMUA_Achr3G09930_001	EnsemblPlants:GSMUA_Achr3P09930_001	EnsemblPlants:GSMUA_Achr3T09930_001	InterPro:IPR000504	InterPro:IPR012677
UniProt:M0SDB0	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR10501	PANTHER:PTHR10501:SF40
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI00029544C4	SEG:seg

Description

U2 small nuclear ribonucleoprotein B'' [Source:GMGC_GENE;Acc:GSMUA_Achr3G09930_001]

Coordinates

chr3:+:7207165..7213054

Molecular Weight (calculated)

26372.8 Da

IEP (calculated)

10.253

GRAVY (calculated)

-0.491

Length

235 amino acids

Sequence
(BLAST)

001: MLSGDIPPNQ TIYINNLNEK VKKEELKRSL YALFSQYGRI LDVVTLKTPK LRGQAWVVFA EVPAASNAVR QMQRFPFYDK PMRIQYAKTK SDCVAKADGT
101: FVPREKKKKQ EEKAAEKKRR FEEAQQSASA ANAQTNGGLS ASQASRQGKT SSQEPMAAPN NILFIQNLPH ETTSMMLQIL FQQYPGFSEV RMIEAKPGIA
201: FVEFADDVQA SIAMQALQGF KITPQNPMVI TYAKK

Best Arabidopsis Sequence Match ( AT2G30260.1 )
(BLAST)

001: MLTADIPPNQ SIYIQNLNER IKKEELKRSL YCLFSQFGRI LDVVALKTPK LRGQAWVTFS EVTAAGHAVR QMQNFPFYDK PMRLQYAKAK SDCLAKAEGT
101: FVPKDKKRKQ EEKVERKRED SQRPNTANGP SANGPSANNG VPAPSFQPSG QETMPPNNIL FIQNLPHETT SMMLQLLFEQ YPGFKEIRMI DAKPGIAFVE
201: YEDDVQASIA MQPLQGFKIT PQNPMVISFA KK

Arabidopsis Description

U2B''U2 small nuclear ribonucleoprotein B'' [Source:UniProtKB/Swiss-Prot;Acc:O22922]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.