Factsheet for AT2G30260.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10721	Canola	nucleus	79.74	81.14
CDY02052	Canola	nucleus	79.31	80.7
Bra018324.1-P	Field mustard	nucleus	78.88	80.26
AT1G06960.1	Thale cress	nucleus	78.88	79.91
VIT_06s0004g07530.t01	Wine grape	nucleus	72.41	71.79
PGSC0003DMT400078262	Potato	nucleus	71.55	71.55
KRH17128	Soybean	nucleus	71.12	71.12
KRH72767	Soybean	nucleus	70.69	70.69
Solyc06g082360.2.1	Tomato	nucleus	70.69	70.39
GSMUA_Achr3P09930_001	Banana	nucleus	69.4	68.51
GSMUA_Achr10P...	Banana	nucleus	67.24	65.82
Zm00001d047699_P001	Maize	extracellular, nucleus	64.66	64.38
EER92401	Sorghum	nucleus	64.66	64.38
Zm00001d028804_P001	Maize	nucleus	63.79	63.52
HORVU4Hr1G055040.1	Barley	nucleus	61.64	61.37
TraesCS4B01G188900.1	Wheat	nucleus	61.64	61.37
TraesCS4D01G190200.1	Wheat	nucleus	61.64	61.37
TraesCS4A01G115300.1	Wheat	nucleus	61.21	60.94
AT2G47580.1	Thale cress	nucleus	54.31	50.4

Protein Annotations

MapMan:16.4.1.2.2	Gene3D:3.30.70.330	EntrezGene:817576	ProteinID:AAC16931.1	ProteinID:AEC08363.1	EMBL:AK227609
ArrayExpress:AT2G30260	EnsemblPlantsGene:AT2G30260	RefSeq:AT2G30260	TAIR:AT2G30260	RefSeq:AT2G30260-TAIR-G	EnsemblPlants:AT2G30260.1
TAIR:AT2G30260.1	EMBL:AY087401	EMBL:BT003068	GO:GO:0000354	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0005681	GO:GO:0005686	GO:GO:0005737	GO:GO:0006139	GO:GO:0006397
GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009987	GO:GO:0015030	GO:GO:0016043
GO:GO:0030529	GO:GO:0035614	InterPro:IPR000504	InterPro:IPR012677	RefSeq:NP_180585.1	InterPro:Nucleotide-bd_a/b_plait_sf
UniProt:O22922	PFAM:PF00076	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293
PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064
PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611
PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010
PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046
PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137
PO:PO:0025022	PO:PO:0025281	PFscan:PS50102	PANTHER:PTHR10501	PANTHER:PTHR10501:SF32	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	Symbol:U2B''	UniParc:UPI000000BEC4	SEG:seg

Description

U2B''U2 small nuclear ribonucleoprotein B'' [Source:UniProtKB/Swiss-Prot;Acc:O22922]

Coordinates

chr2:-:12905345..12907665

Molecular Weight (calculated)

26238.7 Da

IEP (calculated)

9.842

GRAVY (calculated)

-0.563

Length

232 amino acids

Sequence
(BLAST)

001: MLTADIPPNQ SIYIQNLNER IKKEELKRSL YCLFSQFGRI LDVVALKTPK LRGQAWVTFS EVTAAGHAVR QMQNFPFYDK PMRLQYAKAK SDCLAKAEGT
101: FVPKDKKRKQ EEKVERKRED SQRPNTANGP SANGPSANNG VPAPSFQPSG QETMPPNNIL FIQNLPHETT SMMLQLLFEQ YPGFKEIRMI DAKPGIAFVE
201: YEDDVQASIA MQPLQGFKIT PQNPMVISFA KK

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.