Factsheet for Zm00001d047699_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d044917_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30260.1	Zm00001d044917_P001	AT1G49590.1	23524848

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92401	Sorghum	nucleus	98.28	98.28
Zm00001d028804_P001	Maize	nucleus	97.42	97.42
TraesCS4D01G190200.1	Wheat	nucleus	85.84	85.84
HORVU4Hr1G055040.1	Barley	nucleus	85.84	85.84
TraesCS4B01G188900.1	Wheat	nucleus	85.84	85.84
TraesCS4A01G115300.1	Wheat	nucleus	85.41	85.41
VIT_06s0004g07530.t01	Wine grape	nucleus	72.96	72.65
GSMUA_Achr3P09930_001	Banana	nucleus	70.82	70.21
GSMUA_Achr10P...	Banana	nucleus	69.96	68.78
PGSC0003DMT400078262	Potato	nucleus	67.81	68.1
KRH17128	Soybean	nucleus	67.38	67.67
Solyc06g082360.2.1	Tomato	nucleus	67.38	67.38
KRH72767	Soybean	nucleus	66.52	66.81
AT1G06960.1	Thale cress	nucleus	63.95	65.07
AT2G30260.1	Thale cress	nucleus	64.38	64.66
Bra018324.1-P	Field mustard	nucleus	62.66	64.04
CDY10721	Canola	nucleus	62.23	63.6
CDY02052	Canola	nucleus	61.8	63.16
Zm00001d037602_P001	Maize	extracellular	55.79	51.18

Protein Annotations

EntrezGene:100283511	MapMan:16.4.1.2.2	Gene3D:3.30.70.330	ProteinID:AQL07316.1	UniProt:B4FK63	EMBL:BT037501
ncoils:Coil	EMBL:EU964981	EMBL:EU977037	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0019013	GO:GO:0030529
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR10501
PANTHER:PTHR10501:SF32	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI00017B7016
EnsemblPlantsGene:Zm00001d047699	EnsemblPlants:Zm00001d047699_P001	EnsemblPlants:Zm00001d047699_T001	SEG:seg	:	:

Description

U2 small nuclear ribonucleoprotein B''

Coordinates

chr9:+:139511447..139519492

Molecular Weight (calculated)

26140.4 Da

IEP (calculated)

9.804

GRAVY (calculated)

-0.609

Length

233 amino acids

Sequence
(BLAST)

001: MLSADIPPNQ TIYLNNLNEK VKKEELKRSL YALCSQYGRI LDVVALKTQK LRGQAWVVFS EITAATNAFR GLQDFDFYGK KMRVQYAKTK SDCIAKEDGT
101: YAPKEKRKKQ EEKAAEKKRR AEEAQQAGPN AAAAQSNGTG YQASRLGKAS QEPPAPPNNI LFIQNLPDQT TSMMLQILFQ QYPGFREVRM IEAKPGIAFV
201: EFEDDGQSMV AMQALQGFKI TPENPMAISY AKK

Best Arabidopsis Sequence Match ( AT2G30260.1 )
(BLAST)

001: MLTADIPPNQ SIYIQNLNER IKKEELKRSL YCLFSQFGRI LDVVALKTPK LRGQAWVTFS EVTAAGHAVR QMQNFPFYDK PMRLQYAKAK SDCLAKAEGT
101: FVPKDKKRKQ EEKVERKRED SQRPNTANGP SANGPSANNG VPAPSFQPSG QETMPPNNIL FIQNLPHETT SMMLQLLFEQ YPGFKEIRMI DAKPGIAFVE
201: YEDDVQASIA MQPLQGFKIT PQNPMVISFA KK

Arabidopsis Description

U2B''U2 small nuclear ribonucleoprotein B'' [Source:UniProtKB/Swiss-Prot;Acc:O22922]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.