Factsheet for Zm00001d037602_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES17747	Sorghum	nucleus	92.13	90.35
TraesCS1D01G105000.1	Wheat	nucleus	79.53	81.12
TraesCS1B01G127700.1	Wheat	nucleus	79.53	81.12
TraesCS1A01G096000.1	Wheat	nucleus	79.13	80.72
HORVU1Hr1G022420.1	Barley	nucleus	78.74	80.32
GSMUA_Achr11P...	Banana	nucleus	71.65	78.11
GSMUA_Achr2P02230_001	Banana	nucleus	76.38	77.6
VIT_07s0005g00650.t01	Wine grape	nucleus	68.11	74.57
KRG97081	Soybean	nucleus	66.93	70.54
KRH68830	Soybean	nucleus	66.54	70.12
PGSC0003DMT400081386	Potato	nucleus	68.11	68.38
AT2G47580.1	Thale cress	nucleus	66.93	68.0
Solyc09g075200.2.1	Tomato	nucleus	67.72	67.98
CDY63856	Canola	nucleus	60.24	60.0
Bra004445.1-P	Field mustard	nucleus	60.63	59.69
CDX80118	Canola	nucleus	59.84	58.91
Zm00001d047699_P001	Maize	extracellular, nucleus	51.18	55.79
Zm00001d028804_P001	Maize	nucleus	50.39	54.94
CDY39980	Canola	nucleus	31.89	49.69

Protein Annotations

MapMan:16.4.1.1.2	Gene3D:3.30.70.330	ProteinID:AQK84420.1	EMBL:BT069372	UniProt:C0PM53	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005685	GO:GO:0005730	GO:GO:0005737	GO:GO:0005829	GO:GO:0019013
GO:GO:0030529	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR10501	PANTHER:PTHR10501:SF40	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI000195D190	EnsemblPlantsGene:Zm00001d037602	EnsemblPlants:Zm00001d037602_P001	EnsemblPlants:Zm00001d037602_T001	SEG:seg	:

Description

U1 small nuclear ribonucleoprotein A

Coordinates

chr6:+:131217074..131220423

Molecular Weight (calculated)

28304.4 Da

IEP (calculated)

9.710

GRAVY (calculated)

-0.354

Length

254 amino acids

Sequence
(BLAST)

001: MSGEAAAVGG GEGEANGIPP NVTIYINNLN EKIKLEELKK SLTAVFSQFG KILDVLAFKT LKHKGQAWVV FEDVASATEA LKRMQGFPFY DKTMRIQYAK
101: TKSDIIAKAD GTFVPRERRK RTDEKSEKKQ KREHHHDAGA SQIGMGVTAY PGVYGAPQLT QIPIAGGQRV MMPEIIVPNN ILFVQNLPHE TTPMMLQMLF
201: CQYPGFKEVR MIEAKPGIAF VEYGDETQAT AAMNNLQSFK ITKENQMVIT YAKK

Best Arabidopsis Sequence Match ( AT2G47580.1 )
(BLAST)

001: MEMQEANQGG GSEVSPNQTI YINNLNEKVK LDELKKSLNA VFSQFGKILE ILAFKTFKHK GQAWVVFDNT ESASTAIAKM NNFPFYDKEM RIQYAKTKSD
101: VVAKADGTFV PREKRKRHEE KGGGKKKKDQ HHDSTQMGMP MNSAYPGVYG AAPPLSQVPY PGGMKPNMPE APAPPNNILF VQNLPHETTP MVLQMLFCQY
201: QGFKEVRMIE AKPGIAFVEF ADEMQSTVAM QGLQGFKIQQ NQMLITYAKK

Arabidopsis Description

U1AU1A [Source:UniProtKB/TrEMBL;Acc:A0A178VZ67]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.