Factsheet for AT2G47580.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY63856	Canola	nucleus	78.4	76.86
GSMUA_Achr11P...	Banana	nucleus	70.8	75.97
VIT_07s0005g00650.t01	Wine grape	nucleus	70.0	75.43
CDX80118	Canola	nucleus	76.8	74.42
GSMUA_Achr2P02230_001	Banana	nucleus	74.4	74.4
Bra004445.1-P	Field mustard	nucleus	76.0	73.64
Solyc09g075200.2.1	Tomato	nucleus	74.4	73.52
KRG97081	Soybean	nucleus	70.8	73.44
PGSC0003DMT400081386	Potato	nucleus	74.0	73.12
KRH68830	Soybean	nucleus	69.6	72.2
HORVU1Hr1G022420.1	Barley	nucleus	68.0	68.27
TraesCS1A01G096000.1	Wheat	nucleus	67.6	67.87
TraesCS1D01G105000.1	Wheat	nucleus	67.2	67.47
TraesCS1B01G127700.1	Wheat	nucleus	67.2	67.47
Zm00001d037602_P001	Maize	extracellular	68.0	66.93
EES17747	Sorghum	nucleus	68.8	66.41
CDY39980	Canola	nucleus	35.6	54.6
AT1G06960.1	Thale cress	nucleus	50.0	54.59
AT2G30260.1	Thale cress	nucleus	50.4	54.31

Protein Annotations

MapMan:16.4.1.1.2	Gene3D:3.30.70.330	EntrezGene:819371	UniProt:A0A178VZ67	ProteinID:AAC62852.1	ProteinID:AEC10861.1
ArrayExpress:AT2G47580	EnsemblPlantsGene:AT2G47580	RefSeq:AT2G47580	TAIR:AT2G47580	RefSeq:AT2G47580-TAIR-G	EnsemblPlants:AT2G47580.1
TAIR:AT2G47580.1	EMBL:AY052663	EMBL:AY059875	EMBL:AY093341	EMBL:AY142070	Unigene:At.200
GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0005685	GO:GO:0005730
GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006397	GO:GO:0008150	GO:GO:0008152
GO:GO:0008380	GO:GO:0009987	GO:GO:0030529	GO:GO:0030619	GO:GO:0035614	InterPro:IPR000504
InterPro:IPR012677	RefSeq:NP_182280.1	InterPro:Nucleotide-bd_a/b_plait_sf	ProteinID:OAP11610.1	PFAM:PF00076	PO:PO:0000013
PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001016	PO:PO:0001017	PO:PO:0001054
PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095
PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616
PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025
PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047
PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022
PO:PO:0025195	PO:PO:0025281	PFscan:PS50102	PANTHER:PTHR10501	PANTHER:PTHR10501:SF40	UniProt:Q39244
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	Symbol:U1A	UniParc:UPI00000441F9
EMBL:Z49991	SEG:seg	:	:	:	:

Description

U1AU1A [Source:UniProtKB/TrEMBL;Acc:A0A178VZ67]

Coordinates

chr2:+:19517187..19518913

Molecular Weight (calculated)

28076.0 Da

IEP (calculated)

9.692

GRAVY (calculated)

-0.562

Length

250 amino acids

Sequence
(BLAST)

001: MEMQEANQGG GSEVSPNQTI YINNLNEKVK LDELKKSLNA VFSQFGKILE ILAFKTFKHK GQAWVVFDNT ESASTAIAKM NNFPFYDKEM RIQYAKTKSD
101: VVAKADGTFV PREKRKRHEE KGGGKKKKDQ HHDSTQMGMP MNSAYPGVYG AAPPLSQVPY PGGMKPNMPE APAPPNNILF VQNLPHETTP MVLQMLFCQY
201: QGFKEVRMIE AKPGIAFVEF ADEMQSTVAM QGLQGFKIQQ NQMLITYAKK

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.