Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | nucleus | 88.4 | 94.85 |
| VIT_07s0005g00650.t01 | Wine grape | nucleus | 81.2 | 87.5 |
| KRG97081 | Soybean | nucleus | 78.4 | 81.33 |
| KRH68830 | Soybean | nucleus | 78.0 | 80.91 |
| Zm00001d037602_P001 | Maize | extracellular | 77.6 | 76.38 |
| PGSC0003DMT400081386 | Potato | nucleus | 77.2 | 76.28 |
| HORVU1Hr1G022420.1 | Barley | nucleus | 75.6 | 75.9 |
| TraesCS1D01G105000.1 | Wheat | nucleus | 75.6 | 75.9 |
| TraesCS1B01G127700.1 | Wheat | nucleus | 75.6 | 75.9 |
| Solyc09g075200.2.1 | Tomato | nucleus | 76.8 | 75.89 |
| TraesCS1A01G096000.1 | Wheat | nucleus | 75.2 | 75.5 |
| AT2G47580.1 | Thale cress | nucleus | 74.4 | 74.4 |
| EES17747 | Sorghum | nucleus | 76.4 | 73.75 |
| CDY63856 | Canola | nucleus | 68.0 | 66.67 |
| CDX80118 | Canola | nucleus | 67.2 | 65.12 |
| Bra004445.1-P | Field mustard | nucleus | 67.2 | 65.12 |
| GSMUA_Achr3P09930_001 | Banana | nucleus | 55.6 | 59.15 |
| GSMUA_Achr10P... | Banana | nucleus | 54.0 | 56.96 |
| CDY39980 | Canola | nucleus | 33.2 | 50.92 |
Protein Annotations
| MapMan:16.4.1.1.2 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| EnsemblPlantsGene:GSMUA_Achr2G02230_001 | EnsemblPlants:GSMUA_Achr2P02230_001 | EnsemblPlants:GSMUA_Achr2T02230_001 | InterPro:IPR000504 | InterPro:IPR012677 | UniProt:M0S4G4 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR10501 | PANTHER:PTHR10501:SF40 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000295DD4C | SEG:seg | : |
Description
Putative U1 small nuclear ribonucleoprotein A [Source:GMGC_GENE;Acc:GSMUA_Achr2G02230_001]
Coordinates
chr2:-:8084962..8098868
Molecular Weight (calculated)
27879.8 Da
IEP (calculated)
9.809
GRAVY (calculated)
-0.484
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNDGGGGGD APAIPPNMTI YINNLNEKIK LDELKKSLHA VFSQFGKILE VLAFKTLKHK GQAWVVFEDV QSATEALKRM QGFPFYDKPM RIQYAKTKSD
101: IIAKADGTFV PRERRKRHDE RAERKKREQH HDANQGGTGL NSAYSGAYGA VPPLSQLPYG GGAKSMLPEA PALPNNILFI QNLPHETTPM MLQMLFCQYP
201: GFKEVRMVEA KPGIAFVEYG DEMQSTVAMQ GLQGFKITQQ NPMLITYAKK
101: IIAKADGTFV PRERRKRHDE RAERKKREQH HDANQGGTGL NSAYSGAYGA VPPLSQLPYG GGAKSMLPEA PALPNNILFI QNLPHETTPM MLQMLFCQYP
201: GFKEVRMVEA KPGIAFVEYG DEMQSTVAMQ GLQGFKITQQ NPMLITYAKK
001: MEMQEANQGG GSEVSPNQTI YINNLNEKVK LDELKKSLNA VFSQFGKILE ILAFKTFKHK GQAWVVFDNT ESASTAIAKM NNFPFYDKEM RIQYAKTKSD
101: VVAKADGTFV PREKRKRHEE KGGGKKKKDQ HHDSTQMGMP MNSAYPGVYG AAPPLSQVPY PGGMKPNMPE APAPPNNILF VQNLPHETTP MVLQMLFCQY
201: QGFKEVRMIE AKPGIAFVEF ADEMQSTVAM QGLQGFKIQQ NQMLITYAKK
101: VVAKADGTFV PREKRKRHEE KGGGKKKKDQ HHDSTQMGMP MNSAYPGVYG AAPPLSQVPY PGGMKPNMPE APAPPNNILF VQNLPHETTP MVLQMLFCQY
201: QGFKEVRMIE AKPGIAFVEF ADEMQSTVAM QGLQGFKIQQ NQMLITYAKK
Arabidopsis Description
U1AU1A [Source:UniProtKB/TrEMBL;Acc:A0A178VZ67]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.