Factsheet for GSMUA_Achr10P01850_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30260.1	GSMUA_Achr10P...	AT1G49590.1	23524848

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P09930_001	Banana	nucleus	90.72	91.49
VIT_06s0004g07530.t01	Wine grape	nucleus	79.32	80.34
PGSC0003DMT400078262	Potato	nucleus	70.89	72.41
KRH72767	Soybean	nucleus	70.89	72.41
KRH17128	Soybean	nucleus	70.46	71.98
Solyc06g082360.2.1	Tomato	nucleus	69.62	70.82
EER92401	Sorghum	nucleus	69.2	70.39
Zm00001d047699_P001	Maize	extracellular, nucleus	68.78	69.96
Zm00001d028804_P001	Maize	nucleus	68.35	69.53
AT1G06960.1	Thale cress	nucleus	66.24	68.56
AT2G30260.1	Thale cress	nucleus	65.82	67.24
HORVU4Hr1G055040.1	Barley	nucleus	65.4	66.52
TraesCS4A01G115300.1	Wheat	nucleus	65.4	66.52
TraesCS4B01G188900.1	Wheat	nucleus	65.4	66.52
TraesCS4D01G190200.1	Wheat	nucleus	65.4	66.52
CDY10721	Canola	nucleus	61.6	64.04
Bra018324.1-P	Field mustard	nucleus	61.18	63.6
CDY02052	Canola	nucleus	60.76	63.16
GSMUA_Achr11P...	Banana	nucleus	54.01	54.94
GSMUA_Achr2P02230_001	Banana	nucleus	56.96	54.0

Protein Annotations

EnsemblPlants:GSMUA_Achr10P01850_001	EnsemblPlants:GSMUA_Achr10T01850_001	EnsemblPlantsGene:GSMUA_Achr10G01850_001	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR10501	PANTHER:PTHR10501:SF40	PFAM:PF00076	PFscan:PS50102	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000295F10E	UniProt:M0REL2	MapMan:16.4.1.2.2	:

Description

U2 small nuclear ribonucleoprotein B'' [Source:GMGC_GENE;Acc:GSMUA_Achr10G01850_001]

Coordinates

chr10:+:4273878..4278784

Molecular Weight (calculated)

26313.6 Da

IEP (calculated)

10.166

GRAVY (calculated)

-0.451

Length

237 amino acids

Sequence
(BLAST)

001: MLSGDIPPNQ TIYINNLNEK VKKEELKRSL YALFSQYGRI LDVVTLKTAK LRGQAWVVFA EVTAASSAVR QMQRFPFFDK PMRIQYAKTK SDCVAKADGT
101: FVPREKKQKQ EEKAAERKHR TDEAQQSASA FSGPNAQTGG VSASQASRQG KTGSQEPAAA PNNILFIQNL PHETTSMMLQ ILFQQYPGFS EVRMIEAKPG
201: IAFVEFADDV QASIAMQALQ GFKISPQNPM AITYAKK

Best Arabidopsis Sequence Match ( AT2G30260.1 )
(BLAST)

001: MLTADIPPNQ SIYIQNLNER IKKEELKRSL YCLFSQFGRI LDVVALKTPK LRGQAWVTFS EVTAAGHAVR QMQNFPFYDK PMRLQYAKAK SDCLAKAEGT
101: FVPKDKKRKQ EEKVERKRED SQRPNTANGP SANGPSANNG VPAPSFQPSG QETMPPNNIL FIQNLPHETT SMMLQLLFEQ YPGFKEIRMI DAKPGIAFVE
201: YEDDVQASIA MQPLQGFKIT PQNPMVISFA KK

Arabidopsis Description

U2B''U2 small nuclear ribonucleoprotein B'' [Source:UniProtKB/Swiss-Prot;Acc:O22922]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.