Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc01g108430.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G30260.1 | Solyc01g108430.2.1 | AT1G49590.1 | 23524848 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400078262 | Potato | nucleus | 96.57 | 96.98 |
| VIT_06s0004g07530.t01 | Wine grape | nucleus | 77.68 | 77.35 |
| KRH17128 | Soybean | nucleus | 74.68 | 75.0 |
| KRH72767 | Soybean | nucleus | 73.82 | 74.14 |
| AT1G06960.1 | Thale cress | nucleus | 70.39 | 71.62 |
| GSMUA_Achr3P09930_001 | Banana | nucleus | 72.1 | 71.49 |
| AT2G30260.1 | Thale cress | nucleus | 70.39 | 70.69 |
| CDY10721 | Canola | nucleus | 69.1 | 70.61 |
| Bra018324.1-P | Field mustard | nucleus | 68.24 | 69.74 |
| GSMUA_Achr10P... | Banana | nucleus | 70.82 | 69.62 |
| CDY02052 | Canola | nucleus | 67.81 | 69.3 |
| EER92401 | Sorghum | nucleus | 68.24 | 68.24 |
| Zm00001d047699_P001 | Maize | extracellular, nucleus | 67.38 | 67.38 |
| Zm00001d028804_P001 | Maize | nucleus | 66.95 | 66.95 |
| HORVU4Hr1G055040.1 | Barley | nucleus | 65.24 | 65.24 |
| TraesCS4B01G188900.1 | Wheat | nucleus | 64.81 | 64.81 |
| TraesCS4D01G190200.1 | Wheat | nucleus | 64.81 | 64.81 |
| TraesCS4A01G115300.1 | Wheat | nucleus | 64.38 | 64.38 |
| Solyc09g075200.2.1 | Tomato | nucleus | 56.65 | 52.17 |
Protein Annotations
| MapMan:16.4.1.2.2 | Gene3D:3.30.70.330 | ncoils:Coil | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005686 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0035614 |
| InterPro:IPR000504 | InterPro:IPR012677 | UniProt:K4CA95 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 |
| PANTHER:PTHR10501 | PANTHER:PTHR10501:SF32 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 |
| EnsemblPlantsGene:Solyc06g082360.2 | EnsemblPlants:Solyc06g082360.2.1 | UniParc:UPI00027657B0 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr6:-:48202823..48208415
Molecular Weight (calculated)
26221.5 Da
IEP (calculated)
9.894
GRAVY (calculated)
-0.619
Length
233 amino acids
Sequence
(BLAST)
(BLAST)
001: MMLTGDIPPN QTIYIKNLNE KVKKEELKRS LYCLFSQYGR IVDIVALKTP KLRGQSWVVF SEVTSASNAV RQMQNFPFYD KPMRIQYAKS KSDCIAKAEG
101: TYDKKKKQDE KVEKRKRTEE TPPQTGAANG SRTDSNGGGP AAASRQGKPS AQDVAEPNNI LFIQNLPYET TSMMLEVLFK QYPGFREVRM IEAKPGIAFV
201: EFDDDVQSSV AMQALQGFKI TPQNPMAITY AKK
101: TYDKKKKQDE KVEKRKRTEE TPPQTGAANG SRTDSNGGGP AAASRQGKPS AQDVAEPNNI LFIQNLPYET TSMMLEVLFK QYPGFREVRM IEAKPGIAFV
201: EFDDDVQSSV AMQALQGFKI TPQNPMAITY AKK
001: MLTADIPPNQ SIYIQNLNER IKKEELKRSL YCLFSQFGRI LDVVALKTPK LRGQAWVTFS EVTAAGHAVR QMQNFPFYDK PMRLQYAKAK SDCLAKAEGT
101: FVPKDKKRKQ EEKVERKRED SQRPNTANGP SANGPSANNG VPAPSFQPSG QETMPPNNIL FIQNLPHETT SMMLQLLFEQ YPGFKEIRMI DAKPGIAFVE
201: YEDDVQASIA MQPLQGFKIT PQNPMVISFA KK
101: FVPKDKKRKQ EEKVERKRED SQRPNTANGP SANGPSANNG VPAPSFQPSG QETMPPNNIL FIQNLPHETT SMMLQLLFEQ YPGFKEIRMI DAKPGIAFVE
201: YEDDVQASIA MQPLQGFKIT PQNPMVISFA KK
Arabidopsis Description
U2B''U2 small nuclear ribonucleoprotein B'' [Source:UniProtKB/Swiss-Prot;Acc:O22922]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.