Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400066376 | Potato | nucleus | 97.71 | 97.71 |
| VIT_03s0063g00890.t01 | Wine grape | nucleus | 62.21 | 63.42 |
| AT1G49590.1 | Thale cress | nucleus | 54.2 | 58.68 |
| GSMUA_Achr10P... | Banana | nucleus | 42.75 | 58.33 |
| KRH76336 | Soybean | nucleus | 53.82 | 57.09 |
| KRH33288 | Soybean | nucleus | 53.82 | 57.09 |
| KRH71626 | Soybean | nucleus | 53.44 | 56.91 |
| Bra018814.1-P | Field mustard | nucleus | 52.67 | 56.1 |
| CDY50960 | Canola | nucleus | 52.29 | 55.92 |
| CDY28102 | Canola | nucleus | 51.91 | 55.51 |
| EER89414 | Sorghum | nucleus | 50.76 | 54.51 |
| TraesCS7B01G078500.1 | Wheat | nucleus | 50.76 | 54.51 |
| Os06t0215200-01 | Rice | nucleus | 50.38 | 54.32 |
| TraesCS7A01G173200.1 | Wheat | nucleus | 50.38 | 54.1 |
| TraesCS7D01G174600.1 | Wheat | nucleus | 50.0 | 53.69 |
| Zm00001d044917_P001 | Maize | nucleus | 50.0 | 53.25 |
| HORVU7Hr1G035910.4 | Barley | nucleus | 50.0 | 49.62 |
Protein Annotations
| MapMan:35.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003690 |
| GO:GO:0003723 | GO:GO:0003725 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008270 | GO:GO:0008380 | GO:GO:0009791 | GO:GO:0009845 | GO:GO:0009987 |
| GO:GO:0015030 | GO:GO:0046872 | GO:GO:0080188 | InterPro:IPR000690 | UniProt:K4B358 | InterPro:Matrin/U1-C_Znf_C2H2 |
| InterPro:Matrin/U1-like-C_Znf_C2H2 | PFAM:PF06220 | PFscan:PS50171 | PANTHER:PTHR13173 | SMART:SM00451 | SUPFAM:SSF57667 |
| EnsemblPlantsGene:Solyc01g108430.2 | EnsemblPlants:Solyc01g108430.2.1 | InterPro:U1-CZ_Znf_C2H2 | UniParc:UPI0002768252 | InterPro:Znf_C2H2_sf | SEG:seg |
Description
No Description!
Coordinates
chr1:+:95761532..95765661
Molecular Weight (calculated)
29255.1 Da
IEP (calculated)
9.984
GRAVY (calculated)
-1.019
Length
262 amino acids
Sequence
(BLAST)
(BLAST)
001: MTEFWVSQGN KWCDFCKIFI SNNPTSIRNH ELGTRHKESV GNRLNTMRQE KATKDKELKE AARALEQIEA KAQRSYDKDM ARVKEARSTN IQALATHDNG
101: QATTKGSAVS EEWEYDSSSG YYYNQSNGCS YDPNSGFYYT DVLGRWVTQE EALAATQVSS TSISKKPLAK APVSTMGAGS SENKNTVSHQ SGPPPGRVVS
201: TPPNPMRSAK GRPSSLMVNK RKRENEKPKA VTEEEATARK AREAARKRVE EREKSLLGLY KH
101: QATTKGSAVS EEWEYDSSSG YYYNQSNGCS YDPNSGFYYT DVLGRWVTQE EALAATQVSS TSISKKPLAK APVSTMGAGS SENKNTVSHQ SGPPPGRVVS
201: TPPNPMRSAK GRPSSLMVNK RKRENEKPKA VTEEEATARK AREAARKRVE EREKSLLGLY KH
001: MTEYWVSQGN KWCEFCKIWI QNNPTSIRNH DLGKRHRECV DKKLTDMRER SAAKDKELKK NEKLLQQIEA KATRSYQKDI ATAQQVAKAN GAPEDGTSDW
101: MLDSASGYYY NQTNGLHYDS QSGFYYSDSI GHWVTQDEAY AAVKTSSGTK VPLVKKPVSS SGAGPSVGKP PGRLVTASLN PKRAVKGAAS SVDLGNNKRK
201: RQDEKPKKVS AEEKAALKAR EAARKRVEDR EKPLLGLYNR PF
101: MLDSASGYYY NQTNGLHYDS QSGFYYSDSI GHWVTQDEAY AAVKTSSGTK VPLVKKPVSS SGAGPSVGKP PGRLVTASLN PKRAVKGAAS SVDLGNNKRK
201: RQDEKPKKVS AEEKAALKAR EAARKRVEDR EKPLLGLYNR PF
Arabidopsis Description
ZOP1Zinc finger protein ZOP1 [Source:UniProtKB/Swiss-Prot;Acc:Q7XA66]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.