Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
20363867
nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400072223 | Potato | cytosol, nucleus, plasma membrane | 97.66 | 53.06 |
| KRH11024 | Soybean | nucleus | 76.32 | 50.68 |
| VIT_08s0040g00270.t01 | Wine grape | cytosol, nucleus, plasma membrane | 84.5 | 45.48 |
| KRH21266 | Soybean | nucleus | 74.56 | 44.39 |
| CDX81218 | Canola | cytosol, nucleus, plasma membrane | 72.95 | 41.31 |
| Bra037770.1-P | Field mustard | cytosol, nucleus, plasma membrane | 75.29 | 40.62 |
| CDY18718 | Canola | cytosol, nucleus, plasma membrane | 73.1 | 40.52 |
| AT5G64270.1 | Thale cress | cytosol, nucleus, plasma membrane | 75.0 | 40.43 |
| Bra024281.1-P | Field mustard | nucleus | 68.27 | 37.51 |
| Solyc10g081290.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 10.23 | 33.82 |
| HORVU0Hr1G009840.1 | Barley | cytosol, nucleus, plasma membrane | 16.81 | 32.67 |
| PGSC0003DMT400048954 | Potato | mitochondrion | 0.15 | 0.26 |
| Solyc07g041790.1.1 | Tomato | cytosol, nucleus | 0.0 | 0.0 |
| Solyc10g081090.1.1 | Tomato | nucleus | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:35.2 | InterPro:ARM-like | InterPro:ARM-type_fold | ncoils:Coil | GO:GO:0000245 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005686 | GO:GO:0005689 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0071004 | GO:GO:0071013 |
| InterPro:HEAT_type_2 | InterPro:IPR011989 | InterPro:IPR021133 | UniProt:K4D2Z4 | PFAM:PF08920 | PFscan:PS50077 |
| PANTHER:PTHR12097 | InterPro:SF3b_su1 | InterPro:SF3b_su1-like | SUPFAM:SSF48371 | EnsemblPlantsGene:Solyc10g081070.1 | EnsemblPlants:Solyc10g081070.1.1 |
| UniParc:UPI0002769785 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr10:+:62244506..62246618
Molecular Weight (calculated)
76458.8 Da
IEP (calculated)
5.179
GRAVY (calculated)
-0.688
Length
684 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDEIQKTQE ERKKMEQQLA SMNTVTFDTE FYSSNKFEGY EKSIPVNDDD DTFDTENEVA RKMASFTAPK QFFKEVPRGA GEEDEPSGFN KPSKIIDRED
101: DYRRRRLNRV ISPERNDPFL DKTPGPEVRT YADVMREEAL KRQKEELMKE IAKKKKEEQE KAADKKEEVE KPAQKRRNRW DQSQDEGGAK KAKAGSDWDQ
201: PDSTPGIGRW DATPTPGRVG DATPSVKKNR WDETPTPGRV ADSDATPAGG ATPGATPAGM SWDATPKLAG LATPTPKRQR SRWDETPATM GSATPMSGAT
301: PAAAYTPGVT PVGGVELATP TPGAINLRGP VTPEQYNLMR WEKDIEERNR PLTDEELDSM FPQEGYKILD PPASYVPIRT PARKLLATPT PIGTPLYAIP
401: EENRGQQFDV PKEMPGGLPF MKPEDYQYFG SLLNEEDEEE LSPDEQKERK IMKLLLKVKN GTPPQRKTAL RQLTDKAREF GAGPLFNRIL PLLMQPTLED
501: QERHLLVKVI DRVLYKLDEL VRPYVHKILV VIEPLLIDED YYARVEGREI ISNLSKAAGL ATMIAAMRPD IDNIDEYVRN TTARAFSVVA SALGIPALLP
601: FLKAVCQSKK SWQARHTGIK IVQQIAILIG CAVLPHLRSL VEIIEHGLND ENQKVRTITA LSLAALAEAA APYGIESFDS VLKL
101: DYRRRRLNRV ISPERNDPFL DKTPGPEVRT YADVMREEAL KRQKEELMKE IAKKKKEEQE KAADKKEEVE KPAQKRRNRW DQSQDEGGAK KAKAGSDWDQ
201: PDSTPGIGRW DATPTPGRVG DATPSVKKNR WDETPTPGRV ADSDATPAGG ATPGATPAGM SWDATPKLAG LATPTPKRQR SRWDETPATM GSATPMSGAT
301: PAAAYTPGVT PVGGVELATP TPGAINLRGP VTPEQYNLMR WEKDIEERNR PLTDEELDSM FPQEGYKILD PPASYVPIRT PARKLLATPT PIGTPLYAIP
401: EENRGQQFDV PKEMPGGLPF MKPEDYQYFG SLLNEEDEEE LSPDEQKERK IMKLLLKVKN GTPPQRKTAL RQLTDKAREF GAGPLFNRIL PLLMQPTLED
501: QERHLLVKVI DRVLYKLDEL VRPYVHKILV VIEPLLIDED YYARVEGREI ISNLSKAAGL ATMIAAMRPD IDNIDEYVRN TTARAFSVVA SALGIPALLP
601: FLKAVCQSKK SWQARHTGIK IVQQIAILIG CAVLPHLRSL VEIIEHGLND ENQKVRTITA LSLAALAEAA APYGIESFDS VLKL
0001: MADLDPEIAK TQEERRKMEA DLASLTSLTF DRDLYGGNDR ASYSTSIAPN EEDDANLDTT GSLVAQRLAS YTAPRSILND VARPHNEDDD VGFKPRQSIA
0101: EREGEYRNRR LNRVLSPDRV DAFAMGDKTP DASVRTYTDH MRETALQREK EETMRLIAKK KKEEEEAAAK HQKDSAPPPP ASSSSSSSKR RHRWDLPEED
0201: GAAAKKAKAA SSDWDLPDAA PGIGRWDAPT PGRVSDATPS AGRRNRWDET PTPGRVTDSD ATPGGGVTPG ATPSGVTWDG LATPTPKRQR SRWDETPATM
0301: GSATPMGGVT PGAAYTPGVT PIGGIDMATP TPGQLIFRGP MTPEQLNMQR WEKDIEERNR PLSDEELDAM FPKDGYKVLD PPATYVPIRT PARKLQQTPT
0401: PMATPGYVIP EENRGQQYDV PPEVPGGLPF MKPEDYQYFG SLLNEENEEE LSPEEQKERK IMKLLLKVKN GTPPQRKTAL RQLTDKAREL GAGPLFNKIL
0501: PLLMQPTLED QERHLLVKVI DRILYKLDEM VRPYVHKILV VIEPLLIDED YYARVEGREI ISNLSKAAGL ASMIAAMRPD IDNIDEYVRN TTARAFSVVA
0601: SALGIPALLP FLKAVCQSKR SWQARHTGIK IVQQIAILIG CAVLPHLRSL VEIIEHGLSD ENQKVRTITA LSLAALAEAA APYGIESFDS VLKPLWKGIR
0701: SHRGKVLAAF LKAIGFIIPL MDAIYASYYT KEVMVILIRE FQSPDEEMKK IVLKVVKQCV STEGVEPEYI RSDILPEFFR NFWTRKMALE RRNYKQLVET
0801: TVEVANKVGV ADIVGRVVED LKDESEQYRR MVMETIDKVV TNLGASDIDA RLEELLIDGI LYAFQEQTSD DANVMLNGFG AVVNALGQRV KPYLPQICGT
0901: IKWRLNNKSA KVRQQAADLI SRIAVVMKQC GEEQLMGHLG VVLYEYLGEE YPEVLGSILG ALKAIVNVIG MTKMTPPIKD LLPRLTPILK NRHEKVQENC
1001: IDLVGRIADR GAEFVPAREW MRICFELLEM LKAHKKGIRR ATVNTFGYIA KAIGPQDVLA TLLNNLKVQE RQNRVCTTVA IAIVAETCSP FTVLPALMNE
1101: YRVPELNVQN GVLKSLSFLF EYIGEMGKDY IYAVTPLLED ALMDRDLVHR QTAASAVKHM ALGVAGLGCE DALVHLLNFI WPNIFETSPH VINAVMEAIE
1201: GMRVALGAAV ILNYCLQGLF HPARKVREVY WKIYNSLYIG AQDTLVAAYP VLEDEQNNVY SRPELTMFV
0101: EREGEYRNRR LNRVLSPDRV DAFAMGDKTP DASVRTYTDH MRETALQREK EETMRLIAKK KKEEEEAAAK HQKDSAPPPP ASSSSSSSKR RHRWDLPEED
0201: GAAAKKAKAA SSDWDLPDAA PGIGRWDAPT PGRVSDATPS AGRRNRWDET PTPGRVTDSD ATPGGGVTPG ATPSGVTWDG LATPTPKRQR SRWDETPATM
0301: GSATPMGGVT PGAAYTPGVT PIGGIDMATP TPGQLIFRGP MTPEQLNMQR WEKDIEERNR PLSDEELDAM FPKDGYKVLD PPATYVPIRT PARKLQQTPT
0401: PMATPGYVIP EENRGQQYDV PPEVPGGLPF MKPEDYQYFG SLLNEENEEE LSPEEQKERK IMKLLLKVKN GTPPQRKTAL RQLTDKAREL GAGPLFNKIL
0501: PLLMQPTLED QERHLLVKVI DRILYKLDEM VRPYVHKILV VIEPLLIDED YYARVEGREI ISNLSKAAGL ASMIAAMRPD IDNIDEYVRN TTARAFSVVA
0601: SALGIPALLP FLKAVCQSKR SWQARHTGIK IVQQIAILIG CAVLPHLRSL VEIIEHGLSD ENQKVRTITA LSLAALAEAA APYGIESFDS VLKPLWKGIR
0701: SHRGKVLAAF LKAIGFIIPL MDAIYASYYT KEVMVILIRE FQSPDEEMKK IVLKVVKQCV STEGVEPEYI RSDILPEFFR NFWTRKMALE RRNYKQLVET
0801: TVEVANKVGV ADIVGRVVED LKDESEQYRR MVMETIDKVV TNLGASDIDA RLEELLIDGI LYAFQEQTSD DANVMLNGFG AVVNALGQRV KPYLPQICGT
0901: IKWRLNNKSA KVRQQAADLI SRIAVVMKQC GEEQLMGHLG VVLYEYLGEE YPEVLGSILG ALKAIVNVIG MTKMTPPIKD LLPRLTPILK NRHEKVQENC
1001: IDLVGRIADR GAEFVPAREW MRICFELLEM LKAHKKGIRR ATVNTFGYIA KAIGPQDVLA TLLNNLKVQE RQNRVCTTVA IAIVAETCSP FTVLPALMNE
1101: YRVPELNVQN GVLKSLSFLF EYIGEMGKDY IYAVTPLLED ALMDRDLVHR QTAASAVKHM ALGVAGLGCE DALVHLLNFI WPNIFETSPH VINAVMEAIE
1201: GMRVALGAAV ILNYCLQGLF HPARKVREVY WKIYNSLYIG AQDTLVAAYP VLEDEQNNVY SRPELTMFV
Arabidopsis Description
Nuclear protein-like [Source:UniProtKB/TrEMBL;Acc:Q9FMF9]
SUBAcon: [plasma membrane,nucleus,cytosol]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.