Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- nucleus 1
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY18718 | Canola | cytosol, nucleus, plasma membrane | 99.92 | 97.81 |
| Bra037770.1-P | Field mustard | cytosol, nucleus, plasma membrane | 99.83 | 95.11 |
| CDX84510 | Canola | nucleus, peroxisome, plasma membrane | 20.86 | 93.33 |
| PGSC0003DMT400048954 | Potato | mitochondrion | 29.06 | 91.41 |
| CDY43804 | Canola | cytosol, peroxisome, plasma membrane | 63.24 | 91.06 |
| CDX84511 | Canola | cytosol | 40.23 | 88.52 |
| AT5G64270.1 | Thale cress | cytosol, nucleus, plasma membrane | 91.56 | 87.16 |
| KRH21266 | Soybean | nucleus | 81.13 | 85.29 |
| HORVU0Hr1G009840.1 | Barley | cytosol, nucleus, plasma membrane | 24.5 | 84.09 |
| VIT_08s0040g00270.t01 | Wine grape | cytosol, nucleus, plasma membrane | 86.84 | 82.53 |
| KRH11024 | Soybean | nucleus | 70.12 | 82.23 |
| PGSC0003DMT400072223 | Potato | cytosol, nucleus, plasma membrane | 85.18 | 81.73 |
| Solyc10g081090.1.1 | Tomato | nucleus | 8.11 | 77.17 |
| Solyc10g081070.1.1 | Tomato | nucleus | 41.31 | 72.95 |
| CDY43803 | Canola | nucleus | 20.28 | 71.01 |
| CDX84509 | Canola | plastid | 15.31 | 57.99 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:16.4.1.2.4.1 | InterPro:ARM-like | InterPro:ARM-type_fold | EnsemblPlants:CDX81218 | ProteinID:CDX81218 |
| ProteinID:CDX81218.1 | ncoils:Coil | GO:GO:0000245 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003729 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016043 | EnsemblPlantsGene:GSBRNA2T00134684001 | InterPro:HEAT_type_2 | InterPro:IPR011989 | InterPro:IPR021133 | PFAM:PF08920 |
| PFscan:PS50077 | PANTHER:PTHR12097 | InterPro:SF3b_su1 | InterPro:SF3b_su1-like | SMART:SM01349 | SUPFAM:SSF48371 |
| InterPro:TOG | UniParc:UPI0004EE9CA6 | SEG:seg | : | : | : |
Description
BnaC09g06290D
Coordinates
chrLK031824:+:160686..164808
Molecular Weight (calculated)
134660.0 Da
IEP (calculated)
6.009
GRAVY (calculated)
-0.274
Length
1208 amino acids
Sequence
(BLAST)
(BLAST)
0001: MADLDPEIAK TQEERRKIEA ELASLTSVNF DRDLYGGNDR DSYVTSIAPN DEEDSNLDAT GSLVAQRLAS YTAPKSILND VARAHVEDDD GGFKPRQTIA
0101: EREGDYRNRR LNRVLSPDRV DPFAMGEKTP DPSVRTYNDH MRETAQKDSA PAASSKRRNR WDHAEEDGGG GKKAKASDSD WDVAESAPGI GKWDATPGRA
0201: GDATPSAGRR GRNRWDETPT PGRVTDSDAT PGGGVTWDAT PKGSATPTPK RQRSRWDETP ATMGSATPMG GMTPTAAYTP GVTPFGGIDM ATPTPSQLNL
0301: RGAMTPEQYN LARWEKDIEE RNRPLSDEEL DAMFPTEGYK VLDPPASYVP VRTPARKAMG TPTPMTTPGY VIPEEHRGQQ FDVPQELPDG LPFMKPEDYQ
0401: YFAALLNEEN EEELSPDEQK ERKIMKLLLK VKNGTPAQRK TALRQLTDKA RELGAGPLFN KILPLLMQPT LEDQERHLLV KVIDRILYKL DELVRPFVHK
0501: ILVVIEPLLI DEDYYARVEG REIISNLSKA AGLATMIAAM RPDIDNIDEY VRNTTARAFS VVASALGIPA LLPFLKAVCQ SKKSWQARHT GIKIVQQIAI
0601: LIGCAVLPHL RSLVEIIEHG LSDENQKVRT ITALSLAALA EAAAPYGIES FDSVLKPLWK GIRSHRGKVL AAFLKAIGFI IPLMDAIYAS YYTKEVMVIL
0701: IREFQSPDEE MKKIVLKVVK QCVSTEGVEP DYIRSDILPE FFKHFWVRRM ALEKRNYKQL VETTVEIANK VGVADIVARV VEDLKDESEP YRRMVMETID
0801: KVITNLGASD IDSRLEELLI DGILYAFQEQ TTDDTNVMLN GFGAVVNGLG QRVKPYLPQI CGTIKWRLNN KSAKVRQQAA DLISRIAVVM KQCGEEQLMG
0901: HLGVVLYEYL GEEYPEVLGS ILGALKAIVN VIGMTKMTPP IKDLLPRLTP ILKNRHEKVQ ENCIDLVGRI ADRGAEFVPA REWMRICFEL LEMLKAHKKG
1001: IRRATVNTFG YIAKAIGPQD VLATLLNNLK VQERQNRVCT TVAIAIVAET CSPFTVLPAL MNEYRVPELN VQNGVLKSLS FLFEYIGEMG KDYIYAVTPL
1101: LEDALMDRDL VHRQTAASAV KHMALGVAGL GCEDALVHLL NFIWPNIFET SPHVINAVME AIEGMRVALG AAVILNYCLQ GLFHPARKVR EVYWKIYNSL
1201: YIELTMFV
0101: EREGDYRNRR LNRVLSPDRV DPFAMGEKTP DPSVRTYNDH MRETAQKDSA PAASSKRRNR WDHAEEDGGG GKKAKASDSD WDVAESAPGI GKWDATPGRA
0201: GDATPSAGRR GRNRWDETPT PGRVTDSDAT PGGGVTWDAT PKGSATPTPK RQRSRWDETP ATMGSATPMG GMTPTAAYTP GVTPFGGIDM ATPTPSQLNL
0301: RGAMTPEQYN LARWEKDIEE RNRPLSDEEL DAMFPTEGYK VLDPPASYVP VRTPARKAMG TPTPMTTPGY VIPEEHRGQQ FDVPQELPDG LPFMKPEDYQ
0401: YFAALLNEEN EEELSPDEQK ERKIMKLLLK VKNGTPAQRK TALRQLTDKA RELGAGPLFN KILPLLMQPT LEDQERHLLV KVIDRILYKL DELVRPFVHK
0501: ILVVIEPLLI DEDYYARVEG REIISNLSKA AGLATMIAAM RPDIDNIDEY VRNTTARAFS VVASALGIPA LLPFLKAVCQ SKKSWQARHT GIKIVQQIAI
0601: LIGCAVLPHL RSLVEIIEHG LSDENQKVRT ITALSLAALA EAAAPYGIES FDSVLKPLWK GIRSHRGKVL AAFLKAIGFI IPLMDAIYAS YYTKEVMVIL
0701: IREFQSPDEE MKKIVLKVVK QCVSTEGVEP DYIRSDILPE FFKHFWVRRM ALEKRNYKQL VETTVEIANK VGVADIVARV VEDLKDESEP YRRMVMETID
0801: KVITNLGASD IDSRLEELLI DGILYAFQEQ TTDDTNVMLN GFGAVVNGLG QRVKPYLPQI CGTIKWRLNN KSAKVRQQAA DLISRIAVVM KQCGEEQLMG
0901: HLGVVLYEYL GEEYPEVLGS ILGALKAIVN VIGMTKMTPP IKDLLPRLTP ILKNRHEKVQ ENCIDLVGRI ADRGAEFVPA REWMRICFEL LEMLKAHKKG
1001: IRRATVNTFG YIAKAIGPQD VLATLLNNLK VQERQNRVCT TVAIAIVAET CSPFTVLPAL MNEYRVPELN VQNGVLKSLS FLFEYIGEMG KDYIYAVTPL
1101: LEDALMDRDL VHRQTAASAV KHMALGVAGL GCEDALVHLL NFIWPNIFET SPHVINAVME AIEGMRVALG AAVILNYCLQ GLFHPARKVR EVYWKIYNSL
1201: YIELTMFV
0001: MADLDPEIAK TQEERRKMEA DLASLTSLTF DRDLYGGNDR ASYSTSIAPN EEDDANLDTT GSLVAQRLAS YTAPRSILND VARPHNEDDD VGFKPRQSIA
0101: EREGEYRNRR LNRVLSPDRV DAFAMGDKTP DASVRTYTDH MRETALQREK EETMRLIAKK KKEEEEAAAK HQKDSAPPPP ASSSSSSSKR RHRWDLPEED
0201: GAAAKKAKAA SSDWDLPDAA PGIGRWDAPT PGRVSDATPS AGRRNRWDET PTPGRVTDSD ATPGGGVTPG ATPSGVTWDG LATPTPKRQR SRWDETPATM
0301: GSATPMGGVT PGAAYTPGVT PIGGIDMATP TPGQLIFRGP MTPEQLNMQR WEKDIEERNR PLSDEELDAM FPKDGYKVLD PPATYVPIRT PARKLQQTPT
0401: PMATPGYVIP EENRGQQYDV PPEVPGGLPF MKPEDYQYFG SLLNEENEEE LSPEEQKERK IMKLLLKVKN GTPPQRKTAL RQLTDKAREL GAGPLFNKIL
0501: PLLMQPTLED QERHLLVKVI DRILYKLDEM VRPYVHKILV VIEPLLIDED YYARVEGREI ISNLSKAAGL ASMIAAMRPD IDNIDEYVRN TTARAFSVVA
0601: SALGIPALLP FLKAVCQSKR SWQARHTGIK IVQQIAILIG CAVLPHLRSL VEIIEHGLSD ENQKVRTITA LSLAALAEAA APYGIESFDS VLKPLWKGIR
0701: SHRGKVLAAF LKAIGFIIPL MDAIYASYYT KEVMVILIRE FQSPDEEMKK IVLKVVKQCV STEGVEPEYI RSDILPEFFR NFWTRKMALE RRNYKQLVET
0801: TVEVANKVGV ADIVGRVVED LKDESEQYRR MVMETIDKVV TNLGASDIDA RLEELLIDGI LYAFQEQTSD DANVMLNGFG AVVNALGQRV KPYLPQICGT
0901: IKWRLNNKSA KVRQQAADLI SRIAVVMKQC GEEQLMGHLG VVLYEYLGEE YPEVLGSILG ALKAIVNVIG MTKMTPPIKD LLPRLTPILK NRHEKVQENC
1001: IDLVGRIADR GAEFVPAREW MRICFELLEM LKAHKKGIRR ATVNTFGYIA KAIGPQDVLA TLLNNLKVQE RQNRVCTTVA IAIVAETCSP FTVLPALMNE
1101: YRVPELNVQN GVLKSLSFLF EYIGEMGKDY IYAVTPLLED ALMDRDLVHR QTAASAVKHM ALGVAGLGCE DALVHLLNFI WPNIFETSPH VINAVMEAIE
1201: GMRVALGAAV ILNYCLQGLF HPARKVREVY WKIYNSLYIG AQDTLVAAYP VLEDEQNNVY SRPELTMFV
0101: EREGEYRNRR LNRVLSPDRV DAFAMGDKTP DASVRTYTDH MRETALQREK EETMRLIAKK KKEEEEAAAK HQKDSAPPPP ASSSSSSSKR RHRWDLPEED
0201: GAAAKKAKAA SSDWDLPDAA PGIGRWDAPT PGRVSDATPS AGRRNRWDET PTPGRVTDSD ATPGGGVTPG ATPSGVTWDG LATPTPKRQR SRWDETPATM
0301: GSATPMGGVT PGAAYTPGVT PIGGIDMATP TPGQLIFRGP MTPEQLNMQR WEKDIEERNR PLSDEELDAM FPKDGYKVLD PPATYVPIRT PARKLQQTPT
0401: PMATPGYVIP EENRGQQYDV PPEVPGGLPF MKPEDYQYFG SLLNEENEEE LSPEEQKERK IMKLLLKVKN GTPPQRKTAL RQLTDKAREL GAGPLFNKIL
0501: PLLMQPTLED QERHLLVKVI DRILYKLDEM VRPYVHKILV VIEPLLIDED YYARVEGREI ISNLSKAAGL ASMIAAMRPD IDNIDEYVRN TTARAFSVVA
0601: SALGIPALLP FLKAVCQSKR SWQARHTGIK IVQQIAILIG CAVLPHLRSL VEIIEHGLSD ENQKVRTITA LSLAALAEAA APYGIESFDS VLKPLWKGIR
0701: SHRGKVLAAF LKAIGFIIPL MDAIYASYYT KEVMVILIRE FQSPDEEMKK IVLKVVKQCV STEGVEPEYI RSDILPEFFR NFWTRKMALE RRNYKQLVET
0801: TVEVANKVGV ADIVGRVVED LKDESEQYRR MVMETIDKVV TNLGASDIDA RLEELLIDGI LYAFQEQTSD DANVMLNGFG AVVNALGQRV KPYLPQICGT
0901: IKWRLNNKSA KVRQQAADLI SRIAVVMKQC GEEQLMGHLG VVLYEYLGEE YPEVLGSILG ALKAIVNVIG MTKMTPPIKD LLPRLTPILK NRHEKVQENC
1001: IDLVGRIADR GAEFVPAREW MRICFELLEM LKAHKKGIRR ATVNTFGYIA KAIGPQDVLA TLLNNLKVQE RQNRVCTTVA IAIVAETCSP FTVLPALMNE
1101: YRVPELNVQN GVLKSLSFLF EYIGEMGKDY IYAVTPLLED ALMDRDLVHR QTAASAVKHM ALGVAGLGCE DALVHLLNFI WPNIFETSPH VINAVMEAIE
1201: GMRVALGAAV ILNYCLQGLF HPARKVREVY WKIYNSLYIG AQDTLVAAYP VLEDEQNNVY SRPELTMFV
Arabidopsis Description
Nuclear protein-like [Source:UniProtKB/TrEMBL;Acc:Q9FMF9]
SUBAcon: [plasma membrane,nucleus,cytosol]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.