Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- nucleus 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY18718 | Canola | cytosol, nucleus, plasma membrane | 97.24 | 99.92 |
| CDX81218 | Canola | cytosol, nucleus, plasma membrane | 95.11 | 99.83 |
| Os02t0146400-01 | Rice | cytosol, nucleus | 27.21 | 96.37 |
| PGSC0003DMT400048954 | Potato | mitochondrion | 29.18 | 96.35 |
| Solyc10g081090.1.1 | Tomato | nucleus | 9.23 | 92.13 |
| AT5G64270.1 | Thale cress | cytosol, nucleus, plasma membrane | 91.48 | 91.41 |
| Bra024281.1-P | Field mustard | nucleus | 87.15 | 88.75 |
| KRH21266 | Soybean | nucleus | 80.28 | 88.6 |
| VIT_08s0040g00270.t01 | Wine grape | cytosol, nucleus, plasma membrane | 86.04 | 85.84 |
| PGSC0003DMT400072223 | Potato | cytosol, nucleus, plasma membrane | 83.91 | 84.51 |
| HORVU0Hr1G009840.1 | Barley | cytosol, nucleus, plasma membrane | 23.34 | 84.09 |
| KRH11024 | Soybean | nucleus | 68.22 | 83.98 |
| Os02t0478900-00 | Rice | nucleus | 60.57 | 82.85 |
| GSMUA_Achr10P... | Banana | nucleus | 50.0 | 82.77 |
| EES04510 | Sorghum | cytosol, nucleus, plasma membrane | 83.04 | 82.27 |
| Zm00001d053882_P001 | Maize | plastid | 83.04 | 82.27 |
| TraesCS6A01G115900.1 | Wheat | golgi | 82.26 | 81.36 |
| TraesCS6B01G143700.1 | Wheat | cytosol, nucleus, plasma membrane | 82.26 | 81.36 |
| TraesCS6D01G104700.1 | Wheat | nucleus | 82.26 | 81.36 |
| Zm00001d015248_P018 | Maize | cytosol, nucleus, plasma membrane | 82.73 | 79.95 |
| KXG31550 | Sorghum | cytosol, nucleus, plasma membrane | 80.52 | 79.33 |
| TraesCS5B01G017300.1 | Wheat | cytosol, nucleus, plasma membrane | 79.26 | 77.91 |
| TraesCS5D01G025300.1 | Wheat | nucleus | 75.32 | 77.9 |
| Solyc10g081070.1.1 | Tomato | nucleus | 40.62 | 75.29 |
| Os02t0147300-01 | Rice | nucleus | 6.62 | 45.41 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:16.4.1.2.4.1 | InterPro:ARM-like | InterPro:ARM-type_fold | EnsemblPlantsGene:Bra037770 | EnsemblPlants:Bra037770.1 |
| EnsemblPlants:Bra037770.1-P | ncoils:Coil | GO:GO:0000245 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003729 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016043 | InterPro:HEAT_type_2 | InterPro:IPR011989 | InterPro:IPR021133 | UniProt:M4F9K7 | PFAM:PF08920 |
| PFscan:PS50077 | PANTHER:PTHR12097 | InterPro:SF3b_su1 | InterPro:SF3b_su1-like | SMART:SM01349 | SUPFAM:SSF48371 |
| InterPro:TOG | UniParc:UPI0002541AC3 | SEG:seg | : | : | : |
Description
AT5G64270 (E=0.0) | splicing factor, putative
Coordinates
chrA09:+:3483231..3487037
Molecular Weight (calculated)
141232.0 Da
IEP (calculated)
5.779
GRAVY (calculated)
-0.309
Length
1268 amino acids
Sequence
(BLAST)
(BLAST)
0001: MADLDPEIAK TQEERRKIEA ELASLTSVNF DRDLYGGNDR DSYVTSIAPN DEEDSNLDTT GSLVAQRLAS YTAPKSILND VARAHVEDDD DGGFKPRQTI
0101: AEREGDYRNR RLNRVLSPDR VDPFAMGEKT PDPSVRTYND HMRETAVQRE REETMRLIAK KKKEAEEAAK EQKDSGAPAA SSKRRNRWDH AEEDGGGGKK
0201: AKASDSDWDV ADSAPGIGKW DATPGRAGDA TPSAGRRGRN RWDETPTPGR VTDSDATPGG GVTPGATPSG VTWDATPKGS ATPTPKRQRS RWDETPATMG
0301: SATPMGGMTP TAAYTPGVTP FGGIDMATPT PSQLNLRGAM TPEQYNLARW EKDIEERNRP LSDEELDAMF PTEGYKVLDP PASYVPVRTP ARKAMGTPTP
0401: MTTPGYVIPE EHRGQQFDVP QELPDGLPFM KPEDYQYFAA LLNEENEEEL SPDEQKERKI MKLLLKVKNG TPAQRKTALR QLTDKARELG AGPLFNKILP
0501: LLMQPTLEDQ ERHLLVKVID RILYKLDELV RPFVHKILVV IEPLLIDEDY YARVEGREII SNLSKAAGLA TMIAAMRPDI DNIDEYVRNT TARAFSVVAS
0601: ALGIPALLPF LKAVCQSKKS WQARHTGIKI VQQIAILIGC AVLPHLRSLV EIIEHGLSDE NQKVRTITAL SLAALAEAAA PYGIESFDSV LKPLWKGIRS
0701: HRGKVLAAFL KAIGFIIPLM DAIYASYYTK EVMVILIREF QSPDEEMKKI VLKVVKQCVS TEGVEPDYIR SDILPEFFKH FWVRRMALEK RNYKQLVETT
0801: VEIANKVGVA DIVARVVEDL KDESEPYRRM VMETIDKVIT NLGASDIDSR LEELLIDGIL YAFQEQTTDD TNVMLNGFGA VVNGLGQRVK PYLPQICGTI
0901: KWRLNNKSAK VRQQAADLIS RIAVVMKQCG EEQLMGHLGV VLYEYLGEEY PEVLGSILGA LKAIVNVIGM TKMTPPIKDL LPRLTPILKN RHEKVQENCI
1001: DLVGRIADRG AEFVPAREWM RICFELLEML KAHKKGIRRA TVNTFGYIAK AIGPQDVLAT LLNNLKVQER QNRVCTTVAI AIVAETCSPF TVLPALMNEY
1101: RVPELNVQNG VLKSLSFLFE YIGEMGKDYI YAVTPLLEDA LMDRDLVHRQ TAASAVKHMA LGVAGLGCED ALVHLLNFIW PNIFETSPHV INAVMEAIEG
1201: MRVALGAAVI LNYCLQGLFH PARKVREVYW KIYNSLYIGA QDTLVAAYPV LEDEQNNVYS RPELTMFV
0101: AEREGDYRNR RLNRVLSPDR VDPFAMGEKT PDPSVRTYND HMRETAVQRE REETMRLIAK KKKEAEEAAK EQKDSGAPAA SSKRRNRWDH AEEDGGGGKK
0201: AKASDSDWDV ADSAPGIGKW DATPGRAGDA TPSAGRRGRN RWDETPTPGR VTDSDATPGG GVTPGATPSG VTWDATPKGS ATPTPKRQRS RWDETPATMG
0301: SATPMGGMTP TAAYTPGVTP FGGIDMATPT PSQLNLRGAM TPEQYNLARW EKDIEERNRP LSDEELDAMF PTEGYKVLDP PASYVPVRTP ARKAMGTPTP
0401: MTTPGYVIPE EHRGQQFDVP QELPDGLPFM KPEDYQYFAA LLNEENEEEL SPDEQKERKI MKLLLKVKNG TPAQRKTALR QLTDKARELG AGPLFNKILP
0501: LLMQPTLEDQ ERHLLVKVID RILYKLDELV RPFVHKILVV IEPLLIDEDY YARVEGREII SNLSKAAGLA TMIAAMRPDI DNIDEYVRNT TARAFSVVAS
0601: ALGIPALLPF LKAVCQSKKS WQARHTGIKI VQQIAILIGC AVLPHLRSLV EIIEHGLSDE NQKVRTITAL SLAALAEAAA PYGIESFDSV LKPLWKGIRS
0701: HRGKVLAAFL KAIGFIIPLM DAIYASYYTK EVMVILIREF QSPDEEMKKI VLKVVKQCVS TEGVEPDYIR SDILPEFFKH FWVRRMALEK RNYKQLVETT
0801: VEIANKVGVA DIVARVVEDL KDESEPYRRM VMETIDKVIT NLGASDIDSR LEELLIDGIL YAFQEQTTDD TNVMLNGFGA VVNGLGQRVK PYLPQICGTI
0901: KWRLNNKSAK VRQQAADLIS RIAVVMKQCG EEQLMGHLGV VLYEYLGEEY PEVLGSILGA LKAIVNVIGM TKMTPPIKDL LPRLTPILKN RHEKVQENCI
1001: DLVGRIADRG AEFVPAREWM RICFELLEML KAHKKGIRRA TVNTFGYIAK AIGPQDVLAT LLNNLKVQER QNRVCTTVAI AIVAETCSPF TVLPALMNEY
1101: RVPELNVQNG VLKSLSFLFE YIGEMGKDYI YAVTPLLEDA LMDRDLVHRQ TAASAVKHMA LGVAGLGCED ALVHLLNFIW PNIFETSPHV INAVMEAIEG
1201: MRVALGAAVI LNYCLQGLFH PARKVREVYW KIYNSLYIGA QDTLVAAYPV LEDEQNNVYS RPELTMFV
0001: MADLDPEIAK TQEERRKMEA DLASLTSLTF DRDLYGGNDR ASYSTSIAPN EEDDANLDTT GSLVAQRLAS YTAPRSILND VARPHNEDDD VGFKPRQSIA
0101: EREGEYRNRR LNRVLSPDRV DAFAMGDKTP DASVRTYTDH MRETALQREK EETMRLIAKK KKEEEEAAAK HQKDSAPPPP ASSSSSSSKR RHRWDLPEED
0201: GAAAKKAKAA SSDWDLPDAA PGIGRWDAPT PGRVSDATPS AGRRNRWDET PTPGRVTDSD ATPGGGVTPG ATPSGVTWDG LATPTPKRQR SRWDETPATM
0301: GSATPMGGVT PGAAYTPGVT PIGGIDMATP TPGQLIFRGP MTPEQLNMQR WEKDIEERNR PLSDEELDAM FPKDGYKVLD PPATYVPIRT PARKLQQTPT
0401: PMATPGYVIP EENRGQQYDV PPEVPGGLPF MKPEDYQYFG SLLNEENEEE LSPEEQKERK IMKLLLKVKN GTPPQRKTAL RQLTDKAREL GAGPLFNKIL
0501: PLLMQPTLED QERHLLVKVI DRILYKLDEM VRPYVHKILV VIEPLLIDED YYARVEGREI ISNLSKAAGL ASMIAAMRPD IDNIDEYVRN TTARAFSVVA
0601: SALGIPALLP FLKAVCQSKR SWQARHTGIK IVQQIAILIG CAVLPHLRSL VEIIEHGLSD ENQKVRTITA LSLAALAEAA APYGIESFDS VLKPLWKGIR
0701: SHRGKVLAAF LKAIGFIIPL MDAIYASYYT KEVMVILIRE FQSPDEEMKK IVLKVVKQCV STEGVEPEYI RSDILPEFFR NFWTRKMALE RRNYKQLVET
0801: TVEVANKVGV ADIVGRVVED LKDESEQYRR MVMETIDKVV TNLGASDIDA RLEELLIDGI LYAFQEQTSD DANVMLNGFG AVVNALGQRV KPYLPQICGT
0901: IKWRLNNKSA KVRQQAADLI SRIAVVMKQC GEEQLMGHLG VVLYEYLGEE YPEVLGSILG ALKAIVNVIG MTKMTPPIKD LLPRLTPILK NRHEKVQENC
1001: IDLVGRIADR GAEFVPAREW MRICFELLEM LKAHKKGIRR ATVNTFGYIA KAIGPQDVLA TLLNNLKVQE RQNRVCTTVA IAIVAETCSP FTVLPALMNE
1101: YRVPELNVQN GVLKSLSFLF EYIGEMGKDY IYAVTPLLED ALMDRDLVHR QTAASAVKHM ALGVAGLGCE DALVHLLNFI WPNIFETSPH VINAVMEAIE
1201: GMRVALGAAV ILNYCLQGLF HPARKVREVY WKIYNSLYIG AQDTLVAAYP VLEDEQNNVY SRPELTMFV
0101: EREGEYRNRR LNRVLSPDRV DAFAMGDKTP DASVRTYTDH MRETALQREK EETMRLIAKK KKEEEEAAAK HQKDSAPPPP ASSSSSSSKR RHRWDLPEED
0201: GAAAKKAKAA SSDWDLPDAA PGIGRWDAPT PGRVSDATPS AGRRNRWDET PTPGRVTDSD ATPGGGVTPG ATPSGVTWDG LATPTPKRQR SRWDETPATM
0301: GSATPMGGVT PGAAYTPGVT PIGGIDMATP TPGQLIFRGP MTPEQLNMQR WEKDIEERNR PLSDEELDAM FPKDGYKVLD PPATYVPIRT PARKLQQTPT
0401: PMATPGYVIP EENRGQQYDV PPEVPGGLPF MKPEDYQYFG SLLNEENEEE LSPEEQKERK IMKLLLKVKN GTPPQRKTAL RQLTDKAREL GAGPLFNKIL
0501: PLLMQPTLED QERHLLVKVI DRILYKLDEM VRPYVHKILV VIEPLLIDED YYARVEGREI ISNLSKAAGL ASMIAAMRPD IDNIDEYVRN TTARAFSVVA
0601: SALGIPALLP FLKAVCQSKR SWQARHTGIK IVQQIAILIG CAVLPHLRSL VEIIEHGLSD ENQKVRTITA LSLAALAEAA APYGIESFDS VLKPLWKGIR
0701: SHRGKVLAAF LKAIGFIIPL MDAIYASYYT KEVMVILIRE FQSPDEEMKK IVLKVVKQCV STEGVEPEYI RSDILPEFFR NFWTRKMALE RRNYKQLVET
0801: TVEVANKVGV ADIVGRVVED LKDESEQYRR MVMETIDKVV TNLGASDIDA RLEELLIDGI LYAFQEQTSD DANVMLNGFG AVVNALGQRV KPYLPQICGT
0901: IKWRLNNKSA KVRQQAADLI SRIAVVMKQC GEEQLMGHLG VVLYEYLGEE YPEVLGSILG ALKAIVNVIG MTKMTPPIKD LLPRLTPILK NRHEKVQENC
1001: IDLVGRIADR GAEFVPAREW MRICFELLEM LKAHKKGIRR ATVNTFGYIA KAIGPQDVLA TLLNNLKVQE RQNRVCTTVA IAIVAETCSP FTVLPALMNE
1101: YRVPELNVQN GVLKSLSFLF EYIGEMGKDY IYAVTPLLED ALMDRDLVHR QTAASAVKHM ALGVAGLGCE DALVHLLNFI WPNIFETSPH VINAVMEAIE
1201: GMRVALGAAV ILNYCLQGLF HPARKVREVY WKIYNSLYIG AQDTLVAAYP VLEDEQNNVY SRPELTMFV
Arabidopsis Description
Nuclear protein-like [Source:UniProtKB/TrEMBL;Acc:Q9FMF9]
SUBAcon: [plasma membrane,nucleus,cytosol]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.