Factsheet for PGSC0003DMT400072223

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

cytosol 2
nucleus 3
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g081090.1.1	Tomato	nucleus	10.09	100.0
PGSC0003DMT400048954	Potato	mitochondrion	30.18	98.96
Solyc10g081070.1.1	Tomato	nucleus	53.06	97.66
KRH21266	Soybean	nucleus	84.75	92.86
VIT_08s0040g00270.t01	Wine grape	cytosol, nucleus, plasma membrane	90.15	89.3
KRH11024	Soybean	nucleus	71.33	87.18
HORVU0Hr1G009840.1	Barley	cytosol, nucleus, plasma membrane	24.15	86.36
CDX81218	Canola	cytosol, nucleus, plasma membrane	81.73	85.18
CDY18718	Canola	cytosol, nucleus, plasma membrane	83.32	85.01
Bra037770.1-P	Field mustard	cytosol, nucleus, plasma membrane	84.51	83.91
AT5G64270.1	Thale cress	cytosol, nucleus, plasma membrane	84.43	83.77
PGSC0003DMT400094070	Potato	mitochondrion	18.67	80.48
Bra024281.1-P	Field mustard	nucleus	78.32	79.2
PGSC0003DMT400023774	Potato	cytosol	18.9	78.81
PGSC0003DMT400090563	Potato	cytosol, nucleus, plastid	7.39	47.69

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:102582680	MapMan:16.4.1.2.4.1	InterPro:ARM-like	InterPro:ARM-type_fold	ncoils:Coil
GO:GO:0000245	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	InterPro:HEAT_type_2
InterPro:IPR011989	InterPro:IPR021133	UniProt:M1CPW3	PFAM:PF08920	EnsemblPlantsGene:PGSC0003DMG400028106	PGSC:PGSC0003DMG400028106
EnsemblPlants:PGSC0003DMT400072223	PFscan:PS50077	PANTHER:PTHR12097	InterPro:SF3b_su1	InterPro:SF3b_su1-like	SMART:SM01349
SUPFAM:SSF48371	InterPro:TOG	UniParc:UPI000294FCBC	RefSeq:XP_006339243.1	SEG:seg	:

Description

Splicing factor [Source:PGSC_GENE;Acc:PGSC0003DMG400028106]

Coordinates

chr10:-:56843755..56848016

Molecular Weight (calculated)

141258.0 Da

IEP (calculated)

5.686

GRAVY (calculated)

-0.352

Length

1259 amino acids

Sequence
(BLAST)

0001: MDDEIQKTQE ERKKMEQQLA SMNTVTFDTE FYSSNKFEGY EKSIPVNDDD DTFDTENEVA RKMASFTAPK QFFKEVPRGA GEDDEPSGFN KPSKIIDRED
0101: DYRRRRLNRV ISPERNDPFL DKTPGPEVRT YADVMREEAL KRQKEELMKE IAKKKKEEQE KAADKKEEVE KPAQKRRNRW DQSQDEGGAK KAKAGSDWDQ
0201: PDSTPGIGRW DATPTPGRVG DATPSVKKNR WDETPTPGRV ADSDATPAGG ATPGATPAGM SWDATPKLAG LATPTPKRQR SRWDETPATM GSATPMSGAT
0301: PGAAYTPGVT PVGGVELATP TPGAINLRGP VTPEQYNLMR WEKDIEERNR PLTDEELDSM FPQEGYKILD PPASYVPIRT PARKLLATPT PIGTPLYSIP
0401: EENRGQQFDV PKEMPGGLPF MKPEDYQYFG SLLNEEDEEE LSPDEQKERK IMKLLLKVKN GTPPQRKTAL RQLTDKAREF GAGPLFNRIL PLLMQPTLED
0501: QERHLLVKVI DRVLYKLDEL VRPYVHKILV VIEPLLIDED YYARVEGREI ISNLSKAAGL ATMIAAMRPD IDNIDEYVRN TTARAFSVVA SALGIPALLP
0601: FLKAVCQSKK SWQARHTGIK IVQQIAILIG CAVLPHLRSL VEIIEHGLND ENQKVRTITA LSLAALAEAA APYGIESFDS VLKPLWKGIR SHRGKVLAAF
0701: LKAIGFIIPL MDAVYASYYT KEVMVVLIRE FQSPDEEMKK IVLKVVKQCV STEGVEPDYI RQDILPEFFR NFWVRRMALD RRNYKQLVET TVEIANKVGV
0801: ADIVGRIVED LKDESEPYRR MVMETIEKVV ANLGASDIDS RLEELLIDGI LYAFQEQTSD DANVMLNGFG AVVNALGQRV KPYLPQICGT IKWRLNNKSA
0901: KVRQQAADLI SRIAVVMKQC GEEQLMGHLG VVLYEYLGEE YPEVLGSILG ALKAIVNVIG MTKMTPPIKD LLPRLTPILK NRHEKVQENC IDLVGRIADR
1001: GAEFVPAREW MRICFELLEM LKAHKKGIRR ATVNTFGYIA KAIGPQDVLA TLLNNLKVQE RQNRVCTTVA IAIVAETCSP FTVLPALMNE YRVPELNVQN
1101: GVLKSLSFLF EYIGEMGKDY IYAVTPLLED ALMDRDLVHR QTAASAVKHM ALGVAGLGCE DALVHLLNYV WPNIFETSPH VINAVMEAIE GMRVALGAAV
1201: VLNYCLQGLF HPARKVREVY WKIYNSLYIG AQDALVASYP ILEDDENNVY SRPELNMFI

Best Arabidopsis Sequence Match ( AT5G64270.1 )
(BLAST)

0001: MADLDPEIAK TQEERRKMEA DLASLTSLTF DRDLYGGNDR ASYSTSIAPN EEDDANLDTT GSLVAQRLAS YTAPRSILND VARPHNEDDD VGFKPRQSIA
0101: EREGEYRNRR LNRVLSPDRV DAFAMGDKTP DASVRTYTDH MRETALQREK EETMRLIAKK KKEEEEAAAK HQKDSAPPPP ASSSSSSSKR RHRWDLPEED
0201: GAAAKKAKAA SSDWDLPDAA PGIGRWDAPT PGRVSDATPS AGRRNRWDET PTPGRVTDSD ATPGGGVTPG ATPSGVTWDG LATPTPKRQR SRWDETPATM
0301: GSATPMGGVT PGAAYTPGVT PIGGIDMATP TPGQLIFRGP MTPEQLNMQR WEKDIEERNR PLSDEELDAM FPKDGYKVLD PPATYVPIRT PARKLQQTPT
0401: PMATPGYVIP EENRGQQYDV PPEVPGGLPF MKPEDYQYFG SLLNEENEEE LSPEEQKERK IMKLLLKVKN GTPPQRKTAL RQLTDKAREL GAGPLFNKIL
0501: PLLMQPTLED QERHLLVKVI DRILYKLDEM VRPYVHKILV VIEPLLIDED YYARVEGREI ISNLSKAAGL ASMIAAMRPD IDNIDEYVRN TTARAFSVVA
0601: SALGIPALLP FLKAVCQSKR SWQARHTGIK IVQQIAILIG CAVLPHLRSL VEIIEHGLSD ENQKVRTITA LSLAALAEAA APYGIESFDS VLKPLWKGIR
0701: SHRGKVLAAF LKAIGFIIPL MDAIYASYYT KEVMVILIRE FQSPDEEMKK IVLKVVKQCV STEGVEPEYI RSDILPEFFR NFWTRKMALE RRNYKQLVET
0801: TVEVANKVGV ADIVGRVVED LKDESEQYRR MVMETIDKVV TNLGASDIDA RLEELLIDGI LYAFQEQTSD DANVMLNGFG AVVNALGQRV KPYLPQICGT
0901: IKWRLNNKSA KVRQQAADLI SRIAVVMKQC GEEQLMGHLG VVLYEYLGEE YPEVLGSILG ALKAIVNVIG MTKMTPPIKD LLPRLTPILK NRHEKVQENC
1001: IDLVGRIADR GAEFVPAREW MRICFELLEM LKAHKKGIRR ATVNTFGYIA KAIGPQDVLA TLLNNLKVQE RQNRVCTTVA IAIVAETCSP FTVLPALMNE
1101: YRVPELNVQN GVLKSLSFLF EYIGEMGKDY IYAVTPLLED ALMDRDLVHR QTAASAVKHM ALGVAGLGCE DALVHLLNFI WPNIFETSPH VINAVMEAIE
1201: GMRVALGAAV ILNYCLQGLF HPARKVREVY WKIYNSLYIG AQDTLVAAYP VLEDEQNNVY SRPELTMFV

Arabidopsis Description

Nuclear protein-like [Source:UniProtKB/TrEMBL;Acc:Q9FMF9]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.