CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 2
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
MultiLoc:	nucleus
PProwler:	mitochondrion
YLoc:	cytosol

nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400048954	Potato	mitochondrion	32.64	97.66
Solyc10g081090.1.1	Tomato	nucleus	10.71	96.85
Os02t0146400-01	Rice	cytosol, nucleus	30.03	96.37
KRH11024	Soybean	nucleus	78.07	87.09
HORVU0Hr1G009840.1	Barley	cytosol, nucleus, plasma membrane	26.02	84.94
PGSC0003DMT400072223	Potato	cytosol, nucleus, plasma membrane	92.86	84.75
Os02t0478900-00	Rice	nucleus	67.97	84.25
VIT_08s0040g00270.t01	Wine grape	cytosol, nucleus, plasma membrane	93.12	84.19
CDY18718	Canola	cytosol, nucleus, plasma membrane	87.21	81.2
CDX81218	Canola	cytosol, nucleus, plasma membrane	85.29	81.13
EES04510	Sorghum	cytosol, nucleus, plasma membrane	90.08	80.86
Zm00001d053882_P001	Maize	plastid	89.9	80.7
AT5G64270.1	Thale cress	cytosol, nucleus, plasma membrane	88.69	80.3
Bra037770.1-P	Field mustard	cytosol, nucleus, plasma membrane	88.6	80.28
TraesCS6A01G115900.1	Wheat	golgi	89.38	80.11
TraesCS6B01G143700.1	Wheat	cytosol, nucleus, plasma membrane	89.38	80.11
TraesCS6D01G104700.1	Wheat	nucleus	89.3	80.03
Zm00001d015248_P018	Maize	cytosol, nucleus, plasma membrane	89.82	78.66
GSMUA_Achr10P...	Banana	nucleus	52.39	78.59
KXG31550	Sorghum	cytosol, nucleus, plasma membrane	87.29	77.93
Bra024281.1-P	Field mustard	nucleus	83.38	76.95
TraesCS5B01G017300.1	Wheat	cytosol, nucleus, plasma membrane	85.73	76.36
TraesCS5D01G025300.1	Wheat	nucleus	81.03	75.94
Solyc10g081070.1.1	Tomato	nucleus	44.39	74.56
Os02t0147300-01	Rice	nucleus	3.66	22.7

Protein Annotations

Gene3D:1.25.10.10	MapMan:16.4.1.2.4.1	UniProt:A0A0R0GYY9	EMBL:ACUP02008352	InterPro:ARM-like	InterPro:ARM-type_fold
ncoils:Coil	EnsemblPlantsGene:GLYMA_13G2292001	GO:GO:0000245	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005686	GO:GO:0005689	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0071004	GO:GO:0071013	InterPro:HEAT_type_2	InterPro:IPR011989	InterPro:IPR021133
EnsemblPlants:KRH21266	ProteinID:KRH21266	ProteinID:KRH21266.1	PFAM:PF08920	PFscan:PS50077	PANTHER:PTHR12097
InterPro:SF3b_su1	InterPro:SF3b_su1-like	SMART:SM01349	SUPFAM:SSF48371	InterPro:TOG	UniParc:UPI0006EE03B9
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:34139310..34142839

Molecular Weight (calculated)

128230.0 Da

IEP (calculated)

6.442

GRAVY (calculated)

-0.242

Length

1149 amino acids

Sequence
(BLAST)

0001: IISPERHDPF AAGEKTPDPS VRTYADIMRE EALKREKEET LKAIAKKKKE EEEAAKDAPQ QQQQKRRNRW DQSQDDGGAA AAAAAKKAKT SDWDMPDTTP
0101: GRWDATPTPG RVTDATPGRR NRWDETPTPG RVADSDATPA GGATPGATPA GMTWDATPKL SGMATPTPKR QRSRWDETPA TMGSATPLPG ATPAAAYTPG
0201: VTPVGGIELA TPTPGALQGS ITPEQYNLLR WERDIEERNR PLTDEELDAM FPQEGYKVLD PPASYVPIRT PARKLLATPT PLGTPLYQIP EENRGQQFDV
0301: PKEAPGGLPF MKPEDYQYFG ALLNEENEEE LSPDEQKERK IMKLLLKVKN GTPPQRKTAL RQLTDKAREF GAGPLFNRIL PLLMQPTLED QERHLLVKVI
0401: DRVLYKLDEL VRPFVHKILV VIEPLLIDED YYARVEGREI ISNLSKAAGL ATMIAAMRPD IDNIDEYVRN TTARAFSVVA SALGIPALLP FLKAVCQSKK
0501: SWQARHTGIK IVQQIAILIG CAVLPHLRSL VEIIEHGLND ENQKVRTISA LSLAALAEAA APYGIESFDS VLKPLWKGIR QHRGKVLAAF LKAIGFIIPL
0601: MEALYASYYT KEVMLILIRE FQSPDEEMKK IVLKVVKQCV STEGVEAEYI RNDILPEFFK NFWVRRMALD RRNYKQLVET TVEIANKVGV ADIVGRIVED
0701: LKDESEPYRR MVMETIEKVV TNLGASDIDA RLEELLIDGI LYAFQEQTSD DANVMLNGFG AVVNSLGQRV KPYLPQICGT IKWRLNNKSA KVRQQAADLI
0801: SRIAVVMKQC HEEQLMGHLG VVLYEYLGEE YPEVLGSILG ALKSIVNVIG MTKMTPPIKD LLPRLTPILK NRHEKVQENC IDLVGRIADR GAEFVPAREW
0901: MRICFELLEM LKAHKKGIRR ATVNTFGYIA KAIGPQDVLA TLLNNLKVQE RQNRVCTTVA IAIVAETCSP FTVLPALMNE YRVPELNVQN GVLKSLSFLF
1001: EYIGEMGKDY IYAVTPLLED ALMDRDLVHR QTAASAVKHM ALGVAGLGCE DALVHLLNYV WPNIFETSPH VINAVMEAIE GMRVALGAAV VLNYCLQGLF
1101: HPARKVREVY WKIYNSLYIG AQDALVASYP ALEDEQNNVY SRPELMMFI

Best Arabidopsis Sequence Match ( AT5G64270.1 )
(BLAST)

0001: MADLDPEIAK TQEERRKMEA DLASLTSLTF DRDLYGGNDR ASYSTSIAPN EEDDANLDTT GSLVAQRLAS YTAPRSILND VARPHNEDDD VGFKPRQSIA
0101: EREGEYRNRR LNRVLSPDRV DAFAMGDKTP DASVRTYTDH MRETALQREK EETMRLIAKK KKEEEEAAAK HQKDSAPPPP ASSSSSSSKR RHRWDLPEED
0201: GAAAKKAKAA SSDWDLPDAA PGIGRWDAPT PGRVSDATPS AGRRNRWDET PTPGRVTDSD ATPGGGVTPG ATPSGVTWDG LATPTPKRQR SRWDETPATM
0301: GSATPMGGVT PGAAYTPGVT PIGGIDMATP TPGQLIFRGP MTPEQLNMQR WEKDIEERNR PLSDEELDAM FPKDGYKVLD PPATYVPIRT PARKLQQTPT
0401: PMATPGYVIP EENRGQQYDV PPEVPGGLPF MKPEDYQYFG SLLNEENEEE LSPEEQKERK IMKLLLKVKN GTPPQRKTAL RQLTDKAREL GAGPLFNKIL
0501: PLLMQPTLED QERHLLVKVI DRILYKLDEM VRPYVHKILV VIEPLLIDED YYARVEGREI ISNLSKAAGL ASMIAAMRPD IDNIDEYVRN TTARAFSVVA
0601: SALGIPALLP FLKAVCQSKR SWQARHTGIK IVQQIAILIG CAVLPHLRSL VEIIEHGLSD ENQKVRTITA LSLAALAEAA APYGIESFDS VLKPLWKGIR
0701: SHRGKVLAAF LKAIGFIIPL MDAIYASYYT KEVMVILIRE FQSPDEEMKK IVLKVVKQCV STEGVEPEYI RSDILPEFFR NFWTRKMALE RRNYKQLVET
0801: TVEVANKVGV ADIVGRVVED LKDESEQYRR MVMETIDKVV TNLGASDIDA RLEELLIDGI LYAFQEQTSD DANVMLNGFG AVVNALGQRV KPYLPQICGT
0901: IKWRLNNKSA KVRQQAADLI SRIAVVMKQC GEEQLMGHLG VVLYEYLGEE YPEVLGSILG ALKAIVNVIG MTKMTPPIKD LLPRLTPILK NRHEKVQENC
1001: IDLVGRIADR GAEFVPAREW MRICFELLEM LKAHKKGIRR ATVNTFGYIA KAIGPQDVLA TLLNNLKVQE RQNRVCTTVA IAIVAETCSP FTVLPALMNE
1101: YRVPELNVQN GVLKSLSFLF EYIGEMGKDY IYAVTPLLED ALMDRDLVHR QTAASAVKHM ALGVAGLGCE DALVHLLNFI WPNIFETSPH VINAVMEAIE
1201: GMRVALGAAV ILNYCLQGLF HPARKVREVY WKIYNSLYIG AQDTLVAAYP VLEDEQNNVY SRPELTMFV

Arabidopsis Description

Nuclear protein-like [Source:UniProtKB/TrEMBL;Acc:Q9FMF9]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.