Factsheet for PGSC0003DMT400048954

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
nucleus 2
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g081090.1.1	Tomato	nucleus	33.07	100.0
PGSC0003DMT400094070	Potato	mitochondrion	62.24	81.85
PGSC0003DMT400023774	Potato	cytosol	46.88	59.6
KRH21266	Soybean	nucleus	97.66	32.64
PGSC0003DMT400072223	Potato	cytosol, nucleus, plasma membrane	98.96	30.18
CDY18718	Canola	cytosol, nucleus, plasma membrane	96.35	29.98
VIT_08s0040g00270.t01	Wine grape	cytosol, nucleus, plasma membrane	97.14	29.35
Bra037770.1-P	Field mustard	cytosol, nucleus, plasma membrane	96.35	29.18
AT5G64270.1	Thale cress	cytosol, nucleus, plasma membrane	96.35	29.16
CDX81218	Canola	cytosol, nucleus, plasma membrane	91.41	29.06
Bra024281.1-P	Field mustard	nucleus	93.23	28.75
KRH11024	Soybean	nucleus	50.0	18.64
HORVU0Hr1G009840.1	Barley	cytosol, nucleus, plasma membrane	4.95	5.4
Solyc10g081070.1.1	Tomato	nucleus	0.26	0.15
PGSC0003DMT400090563	Potato	cytosol, nucleus, plastid	0.0	0.0

Protein Annotations

Gene3D:1.25.10.10	MapMan:16.4.1.2.4.1	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0000245	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	InterPro:IPR011989	UniProt:M1BN29	EnsemblPlantsGene:PGSC0003DMG400019022
PGSC:PGSC0003DMG400019022	EnsemblPlants:PGSC0003DMT400048954	PANTHER:PTHR12097	InterPro:SF3b_su1-like	SUPFAM:SSF48371	UniParc:UPI0002956ED3
SEG:seg	:	:	:	:	:

Description

Splicing factor 3B subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400019022]

Coordinates

chr12:-:7900539..7901834

Molecular Weight (calculated)

43109.1 Da

IEP (calculated)

7.467

GRAVY (calculated)

0.104

Length

384 amino acids

Sequence
(BLAST)

001: MPLRVKPYLP QICGTIKWRL NNKSAKVRQQ AADLISRIAV VMKQCGEEQL TGHLGVVLYE YLEEEYPEVL GSILGALKAI VNVIGMTKMT PPIKDLLPRL
101: TPILKNRHEK VQENCIDLVG RIADRGAEFV PAREWMRICF ELLEMLKAHK KGIRRATVNT FGYIAKAIGP QDVLATLLNN LKVQERQNRV CTTVAIAIVA
201: ETCSPFTVLP ALMNEYRVPE LNVQNGVLKS LSFLFEYIGE MGKDYIYAVT PLLEDALMDR DLVHRQTAAS AVKHMALGVA GLGCEDALVH LLNYVWPNIF
301: ETSPHVINAV MEAIEGMRVA LGAAVVLNYC LQGLFHPARK VREVYWKIYN SLYIGAQDAL VASYPILEDD ENNVYSRPEL NMFI

Best Arabidopsis Sequence Match ( AT5G64270.1 )
(BLAST)

0001: MADLDPEIAK TQEERRKMEA DLASLTSLTF DRDLYGGNDR ASYSTSIAPN EEDDANLDTT GSLVAQRLAS YTAPRSILND VARPHNEDDD VGFKPRQSIA
0101: EREGEYRNRR LNRVLSPDRV DAFAMGDKTP DASVRTYTDH MRETALQREK EETMRLIAKK KKEEEEAAAK HQKDSAPPPP ASSSSSSSKR RHRWDLPEED
0201: GAAAKKAKAA SSDWDLPDAA PGIGRWDAPT PGRVSDATPS AGRRNRWDET PTPGRVTDSD ATPGGGVTPG ATPSGVTWDG LATPTPKRQR SRWDETPATM
0301: GSATPMGGVT PGAAYTPGVT PIGGIDMATP TPGQLIFRGP MTPEQLNMQR WEKDIEERNR PLSDEELDAM FPKDGYKVLD PPATYVPIRT PARKLQQTPT
0401: PMATPGYVIP EENRGQQYDV PPEVPGGLPF MKPEDYQYFG SLLNEENEEE LSPEEQKERK IMKLLLKVKN GTPPQRKTAL RQLTDKAREL GAGPLFNKIL
0501: PLLMQPTLED QERHLLVKVI DRILYKLDEM VRPYVHKILV VIEPLLIDED YYARVEGREI ISNLSKAAGL ASMIAAMRPD IDNIDEYVRN TTARAFSVVA
0601: SALGIPALLP FLKAVCQSKR SWQARHTGIK IVQQIAILIG CAVLPHLRSL VEIIEHGLSD ENQKVRTITA LSLAALAEAA APYGIESFDS VLKPLWKGIR
0701: SHRGKVLAAF LKAIGFIIPL MDAIYASYYT KEVMVILIRE FQSPDEEMKK IVLKVVKQCV STEGVEPEYI RSDILPEFFR NFWTRKMALE RRNYKQLVET
0801: TVEVANKVGV ADIVGRVVED LKDESEQYRR MVMETIDKVV TNLGASDIDA RLEELLIDGI LYAFQEQTSD DANVMLNGFG AVVNALGQRV KPYLPQICGT
0901: IKWRLNNKSA KVRQQAADLI SRIAVVMKQC GEEQLMGHLG VVLYEYLGEE YPEVLGSILG ALKAIVNVIG MTKMTPPIKD LLPRLTPILK NRHEKVQENC
1001: IDLVGRIADR GAEFVPAREW MRICFELLEM LKAHKKGIRR ATVNTFGYIA KAIGPQDVLA TLLNNLKVQE RQNRVCTTVA IAIVAETCSP FTVLPALMNE
1101: YRVPELNVQN GVLKSLSFLF EYIGEMGKDY IYAVTPLLED ALMDRDLVHR QTAASAVKHM ALGVAGLGCE DALVHLLNFI WPNIFETSPH VINAVMEAIE
1201: GMRVALGAAV ILNYCLQGLF HPARKVREVY WKIYNSLYIG AQDTLVAAYP VLEDEQNNVY SRPELTMFV

Arabidopsis Description

Nuclear protein-like [Source:UniProtKB/TrEMBL;Acc:Q9FMF9]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.