Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 3
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os02t0146400-01 | Rice | cytosol, nucleus | 27.23 | 94.69 |
| PGSC0003DMT400048954 | Potato | mitochondrion | 28.75 | 93.23 |
| Solyc10g081090.1.1 | Tomato | nucleus | 9.0 | 88.19 |
| Bra037770.1-P | Field mustard | cytosol, nucleus, plasma membrane | 88.75 | 87.15 |
| AT5G64270.1 | Thale cress | cytosol, nucleus, plasma membrane | 86.1 | 84.48 |
| KRH21266 | Soybean | nucleus | 76.95 | 83.38 |
| VIT_08s0040g00270.t01 | Wine grape | cytosol, nucleus, plasma membrane | 81.53 | 79.86 |
| Os02t0478900-00 | Rice | nucleus | 59.2 | 79.5 |
| HORVU0Hr1G009840.1 | Barley | cytosol, nucleus, plasma membrane | 22.33 | 78.98 |
| KRH11024 | Soybean | nucleus | 64.98 | 78.54 |
| PGSC0003DMT400072223 | Potato | cytosol, nucleus, plasma membrane | 79.2 | 78.32 |
| Zm00001d053882_P001 | Maize | plastid | 79.84 | 77.66 |
| EES04510 | Sorghum | cytosol, nucleus, plasma membrane | 79.84 | 77.66 |
| TraesCS6A01G115900.1 | Wheat | golgi | 79.04 | 76.76 |
| TraesCS6B01G143700.1 | Wheat | cytosol, nucleus, plasma membrane | 79.04 | 76.76 |
| TraesCS6D01G104700.1 | Wheat | nucleus | 79.04 | 76.76 |
| GSMUA_Achr10P... | Banana | nucleus | 47.15 | 76.63 |
| Zm00001d015248_P018 | Maize | cytosol, nucleus, plasma membrane | 79.92 | 75.84 |
| KXG31550 | Sorghum | cytosol, nucleus, plasma membrane | 77.99 | 75.45 |
| TraesCS5D01G025300.1 | Wheat | nucleus | 73.17 | 74.31 |
| TraesCS5B01G017300.1 | Wheat | cytosol, nucleus, plasma membrane | 76.95 | 74.26 |
| Solyc10g081070.1.1 | Tomato | nucleus | 37.51 | 68.27 |
| Os02t0147300-01 | Rice | nucleus | 6.75 | 45.41 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:16.4.1.2.4.1 | InterPro:ARM-like | InterPro:ARM-type_fold | EnsemblPlantsGene:Bra024281 | EnsemblPlants:Bra024281.1 |
| EnsemblPlants:Bra024281.1-P | ncoils:Coil | GO:GO:0000245 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003729 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016043 | InterPro:IPR011989 | UniProt:M4E677 | PFAM:PF08920 | PANTHER:PTHR12097 | InterPro:SF3b_su1 |
| InterPro:SF3b_su1-like | SUPFAM:SSF48371 | UniParc:UPI000253F3A4 | SEG:seg | : | : |
Description
AT5G64270 (E=0.0) | splicing factor, putative
Coordinates
chrA06:+:14704024..14707761
Molecular Weight (calculated)
138956.0 Da
IEP (calculated)
6.423
GRAVY (calculated)
-0.274
Length
1245 amino acids
Sequence
(BLAST)
(BLAST)
0001: MADIDPLIAK TQEERRRLES DLERVSLASV TLDRDLYGGN DRDSYSTSIA PYDDEDPNLD AHGSLVAQRL ASYTAPKSIL NDVARLHSED YDDGGFKPRQ
0101: TIAEREGEYR NRRLNRVLSP DRVDPFAMGE KTPDPSVRTY NDHMRETAVQ REREETLRLI AKKKKEAEEV AQKQKDSAHS KKRHRWEEAE EDGGGATSSK
0201: KAKASASDWD AADSTPGRVS DATPSVGRRN RWDERTPGRV TDSDATPGAT PSGVTWDATP KGSATPTPKR QRSRWDETPA NVAGVTPTAA YYTLGVTPFG
0301: GIDMATPAPG PIDLRGAMTP DQYNQARWEK EIEERNKPMS DEELDAMFPK GYKVLNQPAS YVPIRSPARK ALGTPTPMTT PGYIIPEENR RQQYDVPPEL
0401: PGGLPFMKPE DYQYFGALLN EEKEEELSPD EQKERKIMAL LLKVKNGTPA QRKTALRQLT DKAREFGAGP LFNKILPLLM QPTLEDQERH LLVKVIDRIL
0501: YKLDELVRPF VHKILVVIEP LLIDDDYYAR AEGREIISNL SKAAGLATMI AAMRPDIDNA DEYVRNTTAR AFAVVASALG IPALLPFLKA VCQSKKSWQA
0601: RHTGIKIVQQ IAILIGCAVL PHLNSLVELI EHGLSDENLK VRTITSLSLA ALAEASAPYG IESFDSVLIL LWKGIRSHRG KVLAAFLKAI GFIIPLMDAI
0701: HARCYTKEVM LILTREFQSP DEEMKKIVLK VVKQCVSTEG VEADYIRSDV LPEFFKHLWV KRMALDKRNY KPLVETTVEI ANKVGVADIV ERLVSELKDE
0801: SELYRRMVME AIDKVVTNLG ASDIVARSEE LLIDGILFAF QEQTNDDANV MLNGFGAVVN GLGPRVKPYL PQICGTIKWR LTYKSANVRQ QAADLISRIA
0901: VVMKQCGEEQ LMGHLGVVLY EYLGEEYPEV LGSVLGALKA IVNVIGMTKM TPPIKDLLPR LTPILKNRHE KVQENCIDLV GRIADRGAEF VPAREWMRIS
1001: FELLEMLKAH KKGIRRATVN TFGYIAKAIG PQDVLATLLN NLRVQERQNR VCTTVAIAIV AETCSPFTVL PALVNEYRVP ELNVQNGVLK SLSFLFEYIG
1101: EMGKDYIYAV TPLLEDALMD RDLVHRQTAA SAVKHMALGV AGLGCEDALV HLLNLMWPNI FETSPHVINA VMEAIEGMRV ALGGAVILNY CLQGLFHPAR
1201: KVREVYWKIY NSLYIGAQDT LVAAYPVFEN EQTNVSSRPE LAMFV
0101: TIAEREGEYR NRRLNRVLSP DRVDPFAMGE KTPDPSVRTY NDHMRETAVQ REREETLRLI AKKKKEAEEV AQKQKDSAHS KKRHRWEEAE EDGGGATSSK
0201: KAKASASDWD AADSTPGRVS DATPSVGRRN RWDERTPGRV TDSDATPGAT PSGVTWDATP KGSATPTPKR QRSRWDETPA NVAGVTPTAA YYTLGVTPFG
0301: GIDMATPAPG PIDLRGAMTP DQYNQARWEK EIEERNKPMS DEELDAMFPK GYKVLNQPAS YVPIRSPARK ALGTPTPMTT PGYIIPEENR RQQYDVPPEL
0401: PGGLPFMKPE DYQYFGALLN EEKEEELSPD EQKERKIMAL LLKVKNGTPA QRKTALRQLT DKAREFGAGP LFNKILPLLM QPTLEDQERH LLVKVIDRIL
0501: YKLDELVRPF VHKILVVIEP LLIDDDYYAR AEGREIISNL SKAAGLATMI AAMRPDIDNA DEYVRNTTAR AFAVVASALG IPALLPFLKA VCQSKKSWQA
0601: RHTGIKIVQQ IAILIGCAVL PHLNSLVELI EHGLSDENLK VRTITSLSLA ALAEASAPYG IESFDSVLIL LWKGIRSHRG KVLAAFLKAI GFIIPLMDAI
0701: HARCYTKEVM LILTREFQSP DEEMKKIVLK VVKQCVSTEG VEADYIRSDV LPEFFKHLWV KRMALDKRNY KPLVETTVEI ANKVGVADIV ERLVSELKDE
0801: SELYRRMVME AIDKVVTNLG ASDIVARSEE LLIDGILFAF QEQTNDDANV MLNGFGAVVN GLGPRVKPYL PQICGTIKWR LTYKSANVRQ QAADLISRIA
0901: VVMKQCGEEQ LMGHLGVVLY EYLGEEYPEV LGSVLGALKA IVNVIGMTKM TPPIKDLLPR LTPILKNRHE KVQENCIDLV GRIADRGAEF VPAREWMRIS
1001: FELLEMLKAH KKGIRRATVN TFGYIAKAIG PQDVLATLLN NLRVQERQNR VCTTVAIAIV AETCSPFTVL PALVNEYRVP ELNVQNGVLK SLSFLFEYIG
1101: EMGKDYIYAV TPLLEDALMD RDLVHRQTAA SAVKHMALGV AGLGCEDALV HLLNLMWPNI FETSPHVINA VMEAIEGMRV ALGGAVILNY CLQGLFHPAR
1201: KVREVYWKIY NSLYIGAQDT LVAAYPVFEN EQTNVSSRPE LAMFV
0001: MADLDPEIAK TQEERRKMEA DLASLTSLTF DRDLYGGNDR ASYSTSIAPN EEDDANLDTT GSLVAQRLAS YTAPRSILND VARPHNEDDD VGFKPRQSIA
0101: EREGEYRNRR LNRVLSPDRV DAFAMGDKTP DASVRTYTDH MRETALQREK EETMRLIAKK KKEEEEAAAK HQKDSAPPPP ASSSSSSSKR RHRWDLPEED
0201: GAAAKKAKAA SSDWDLPDAA PGIGRWDAPT PGRVSDATPS AGRRNRWDET PTPGRVTDSD ATPGGGVTPG ATPSGVTWDG LATPTPKRQR SRWDETPATM
0301: GSATPMGGVT PGAAYTPGVT PIGGIDMATP TPGQLIFRGP MTPEQLNMQR WEKDIEERNR PLSDEELDAM FPKDGYKVLD PPATYVPIRT PARKLQQTPT
0401: PMATPGYVIP EENRGQQYDV PPEVPGGLPF MKPEDYQYFG SLLNEENEEE LSPEEQKERK IMKLLLKVKN GTPPQRKTAL RQLTDKAREL GAGPLFNKIL
0501: PLLMQPTLED QERHLLVKVI DRILYKLDEM VRPYVHKILV VIEPLLIDED YYARVEGREI ISNLSKAAGL ASMIAAMRPD IDNIDEYVRN TTARAFSVVA
0601: SALGIPALLP FLKAVCQSKR SWQARHTGIK IVQQIAILIG CAVLPHLRSL VEIIEHGLSD ENQKVRTITA LSLAALAEAA APYGIESFDS VLKPLWKGIR
0701: SHRGKVLAAF LKAIGFIIPL MDAIYASYYT KEVMVILIRE FQSPDEEMKK IVLKVVKQCV STEGVEPEYI RSDILPEFFR NFWTRKMALE RRNYKQLVET
0801: TVEVANKVGV ADIVGRVVED LKDESEQYRR MVMETIDKVV TNLGASDIDA RLEELLIDGI LYAFQEQTSD DANVMLNGFG AVVNALGQRV KPYLPQICGT
0901: IKWRLNNKSA KVRQQAADLI SRIAVVMKQC GEEQLMGHLG VVLYEYLGEE YPEVLGSILG ALKAIVNVIG MTKMTPPIKD LLPRLTPILK NRHEKVQENC
1001: IDLVGRIADR GAEFVPAREW MRICFELLEM LKAHKKGIRR ATVNTFGYIA KAIGPQDVLA TLLNNLKVQE RQNRVCTTVA IAIVAETCSP FTVLPALMNE
1101: YRVPELNVQN GVLKSLSFLF EYIGEMGKDY IYAVTPLLED ALMDRDLVHR QTAASAVKHM ALGVAGLGCE DALVHLLNFI WPNIFETSPH VINAVMEAIE
1201: GMRVALGAAV ILNYCLQGLF HPARKVREVY WKIYNSLYIG AQDTLVAAYP VLEDEQNNVY SRPELTMFV
0101: EREGEYRNRR LNRVLSPDRV DAFAMGDKTP DASVRTYTDH MRETALQREK EETMRLIAKK KKEEEEAAAK HQKDSAPPPP ASSSSSSSKR RHRWDLPEED
0201: GAAAKKAKAA SSDWDLPDAA PGIGRWDAPT PGRVSDATPS AGRRNRWDET PTPGRVTDSD ATPGGGVTPG ATPSGVTWDG LATPTPKRQR SRWDETPATM
0301: GSATPMGGVT PGAAYTPGVT PIGGIDMATP TPGQLIFRGP MTPEQLNMQR WEKDIEERNR PLSDEELDAM FPKDGYKVLD PPATYVPIRT PARKLQQTPT
0401: PMATPGYVIP EENRGQQYDV PPEVPGGLPF MKPEDYQYFG SLLNEENEEE LSPEEQKERK IMKLLLKVKN GTPPQRKTAL RQLTDKAREL GAGPLFNKIL
0501: PLLMQPTLED QERHLLVKVI DRILYKLDEM VRPYVHKILV VIEPLLIDED YYARVEGREI ISNLSKAAGL ASMIAAMRPD IDNIDEYVRN TTARAFSVVA
0601: SALGIPALLP FLKAVCQSKR SWQARHTGIK IVQQIAILIG CAVLPHLRSL VEIIEHGLSD ENQKVRTITA LSLAALAEAA APYGIESFDS VLKPLWKGIR
0701: SHRGKVLAAF LKAIGFIIPL MDAIYASYYT KEVMVILIRE FQSPDEEMKK IVLKVVKQCV STEGVEPEYI RSDILPEFFR NFWTRKMALE RRNYKQLVET
0801: TVEVANKVGV ADIVGRVVED LKDESEQYRR MVMETIDKVV TNLGASDIDA RLEELLIDGI LYAFQEQTSD DANVMLNGFG AVVNALGQRV KPYLPQICGT
0901: IKWRLNNKSA KVRQQAADLI SRIAVVMKQC GEEQLMGHLG VVLYEYLGEE YPEVLGSILG ALKAIVNVIG MTKMTPPIKD LLPRLTPILK NRHEKVQENC
1001: IDLVGRIADR GAEFVPAREW MRICFELLEM LKAHKKGIRR ATVNTFGYIA KAIGPQDVLA TLLNNLKVQE RQNRVCTTVA IAIVAETCSP FTVLPALMNE
1101: YRVPELNVQN GVLKSLSFLF EYIGEMGKDY IYAVTPLLED ALMDRDLVHR QTAASAVKHM ALGVAGLGCE DALVHLLNFI WPNIFETSPH VINAVMEAIE
1201: GMRVALGAAV ILNYCLQGLF HPARKVREVY WKIYNSLYIG AQDTLVAAYP VLEDEQNNVY SRPELTMFV
Arabidopsis Description
Nuclear protein-like [Source:UniProtKB/TrEMBL;Acc:Q9FMF9]
SUBAcon: [plasma membrane,nucleus,cytosol]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.