Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- plasma membrane 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G115900.1 | Wheat | golgi | 99.92 | 99.92 |
| TraesCS6D01G104700.1 | Wheat | nucleus | 99.77 | 99.77 |
| HORVU6Hr1G020850.3 | Barley | cytosol, nucleus, plasma membrane | 99.45 | 99.38 |
| Os02t0146400-01 | Rice | cytosol, nucleus | 27.46 | 98.32 |
| EES04510 | Sorghum | cytosol, nucleus, plasma membrane | 93.14 | 93.28 |
| Zm00001d053882_P001 | Maize | plastid | 92.9 | 93.05 |
| Zm00001d015248_P018 | Maize | cytosol, nucleus, plasma membrane | 92.98 | 90.85 |
| CDX84510 | Canola | nucleus, peroxisome, plasma membrane | 19.11 | 90.74 |
| CDY43804 | Canola | cytosol, peroxisome, plasma membrane | 59.36 | 90.7 |
| KRH21266 | Soybean | nucleus | 80.11 | 89.38 |
| TraesCS5B01G017300.1 | Wheat | cytosol, nucleus, plasma membrane | 89.94 | 89.38 |
| CDX84511 | Canola | cytosol | 38.22 | 89.25 |
| KXG31550 | Sorghum | cytosol, nucleus, plasma membrane | 89.16 | 88.81 |
| Solyc07g041790.1.1 | Tomato | cytosol, nucleus | 4.99 | 87.67 |
| GSMUA_Achr10P... | Banana | nucleus | 51.25 | 85.77 |
| Os02t0478900-00 | Rice | nucleus | 61.62 | 85.22 |
| KRH11024 | Soybean | nucleus | 67.08 | 83.5 |
| Bra037770.1-P | Field mustard | cytosol, nucleus, plasma membrane | 81.36 | 82.26 |
| AT5G64270.1 | Thale cress | cytosol, nucleus, plasma membrane | 81.12 | 81.95 |
| PGSC0003DMT400094070 | Potato | mitochondrion | 18.25 | 80.14 |
| Bra024281.1-P | Field mustard | nucleus | 76.76 | 79.04 |
| VIT_19s0015g00400.t01 | Wine grape | cytosol | 4.76 | 78.21 |
| PGSC0003DMT400023774 | Potato | cytosol | 18.33 | 77.81 |
| VIT_19s0015g00420.t01 | Wine grape | cytosol | 4.84 | 77.5 |
| CDY43803 | Canola | nucleus | 14.27 | 53.04 |
| CDX84509 | Canola | plastid | 10.22 | 41.07 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:16.4.1.2.4.1 | InterPro:ARM-like | InterPro:ARM-type_fold | ncoils:Coil | GO:GO:0000245 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | InterPro:HEAT_type_2 | InterPro:IPR011989 |
| InterPro:IPR021133 | PFAM:PF08920 | PFscan:PS50077 | PANTHER:PTHR12097 | InterPro:SF3b_su1 | InterPro:SF3b_su1-like |
| SMART:SM01349 | SUPFAM:SSF48371 | InterPro:TOG | EnsemblPlantsGene:TraesCS6B01G143700 | EnsemblPlants:TraesCS6B01G143700.1 | SEG:seg |
Description
No Description!
Coordinates
chr6B:+:143435040..143438888
Molecular Weight (calculated)
142113.0 Da
IEP (calculated)
6.155
GRAVY (calculated)
-0.306
Length
1282 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDGIDAELAR AQDERRKLEE ALAAGALMAV SSVTFDKDLY GGGGSGSDRF AGYDTSIPAS EDDAPEDDSA EPSAANPAVR RLASYTGHAV AAADIPRSED
0101: DDGMPAKRSQ RIIDREDDYR RRRLDRIISP ERHDAFASGE ATPDPSVRTY ADAMRESKVQ QEKEHVLREI AKKKKEEEEK AKEKKAAPQP QPAATKRRNR
0201: WDQSQDGDAA AGAKKSKTSD WDAPDATPGI GRWDATPGRV GDATPSVRRN RWDETPTPGR MADADATPAA GGITPGATPS GAWDATPKLP GGLVTPTPKK
0301: QRSRWDETPA SMGSATPGGT AATPAGFNTP GQTPFGAENL ATPTPGHLAA RGPMTPEQYQ LLRWERDIEE RNRPLTDEEL DSMFPQEGYK ILEPPASYQP
0401: IRTPARKLLA TPTPLGTPMY AIPEENRGQH FDVPKDLGPG LPLMKPEDYQ YFGTLLNEDE EEQLTPEEQK ERKIMKLLLK VKNGTPPQRK TALRQLTDKA
0501: REFGAGPLFN KILPLLMQPT LEDQERHLLV KVIDRVLYKL DELVRPFVHK ILVVIEPLLI DEDYYARVEG REIISNLSKA AGLATMIAAM RPDIDNIDEY
0601: VRNTTARAFS VVASALGIPA LLPFLKAVCQ SKKSWQARHT GIKIVQQIAI LMGCAVLPHL KNLVEIIEHG LSDENQKVRT ITALSLAALA EAAAPYGIES
0701: FDSVLKPLWK GIRSHRGKVL AAFLKAIGFI IPLMDALYAS YYTKEVMQVL IREFQSPDEE MKKIVLKVVK QCVSTEGVEA DYIRSDILPD FFKHFWVRRM
0801: ALDRRNYKQL VETTVEMANK VGVTGIVGKI VEDLKDESEP YRRMVMETIE KVVANLGASD IDPRLEELLI DGILYAFQEQ TSDDANVMLN GFGAVVNALG
0901: QRVKPYLPQI CGTIKWRLNN KSAKVRQQAA DLISRIAIVM KQCQEEQLMG HLGVVLYEYL GEEYPEVLGS ILGALKAIVN VIGMTKMTPP IKDLLPRLTP
1001: ILKNRHEKVQ ENCIDLVGRI ADRGAEFVPA REWMRICFEL LEMLKAHKKG IRRATVNTFG YIAKAIGPQD VLATLLNNLK VQERQNRVCT TVAIAIVAET
1101: CSPFTVLPAL MNEYRVPELN VQNGVLKSLS FLFEYIGEMG KDYIYAVTPL LEDALMDRDL VHRQTAASAV KHMALGVAGL GCEDALVHLL NYIWPNIFET
1201: SPHVINAVME AIEGMRVALG AAVVLNYCLQ GLFHPARKVR EVYWKIYNSL YIGAQDALVA SYPALGDDGD NIFSRPELAM FV
0101: DDGMPAKRSQ RIIDREDDYR RRRLDRIISP ERHDAFASGE ATPDPSVRTY ADAMRESKVQ QEKEHVLREI AKKKKEEEEK AKEKKAAPQP QPAATKRRNR
0201: WDQSQDGDAA AGAKKSKTSD WDAPDATPGI GRWDATPGRV GDATPSVRRN RWDETPTPGR MADADATPAA GGITPGATPS GAWDATPKLP GGLVTPTPKK
0301: QRSRWDETPA SMGSATPGGT AATPAGFNTP GQTPFGAENL ATPTPGHLAA RGPMTPEQYQ LLRWERDIEE RNRPLTDEEL DSMFPQEGYK ILEPPASYQP
0401: IRTPARKLLA TPTPLGTPMY AIPEENRGQH FDVPKDLGPG LPLMKPEDYQ YFGTLLNEDE EEQLTPEEQK ERKIMKLLLK VKNGTPPQRK TALRQLTDKA
0501: REFGAGPLFN KILPLLMQPT LEDQERHLLV KVIDRVLYKL DELVRPFVHK ILVVIEPLLI DEDYYARVEG REIISNLSKA AGLATMIAAM RPDIDNIDEY
0601: VRNTTARAFS VVASALGIPA LLPFLKAVCQ SKKSWQARHT GIKIVQQIAI LMGCAVLPHL KNLVEIIEHG LSDENQKVRT ITALSLAALA EAAAPYGIES
0701: FDSVLKPLWK GIRSHRGKVL AAFLKAIGFI IPLMDALYAS YYTKEVMQVL IREFQSPDEE MKKIVLKVVK QCVSTEGVEA DYIRSDILPD FFKHFWVRRM
0801: ALDRRNYKQL VETTVEMANK VGVTGIVGKI VEDLKDESEP YRRMVMETIE KVVANLGASD IDPRLEELLI DGILYAFQEQ TSDDANVMLN GFGAVVNALG
0901: QRVKPYLPQI CGTIKWRLNN KSAKVRQQAA DLISRIAIVM KQCQEEQLMG HLGVVLYEYL GEEYPEVLGS ILGALKAIVN VIGMTKMTPP IKDLLPRLTP
1001: ILKNRHEKVQ ENCIDLVGRI ADRGAEFVPA REWMRICFEL LEMLKAHKKG IRRATVNTFG YIAKAIGPQD VLATLLNNLK VQERQNRVCT TVAIAIVAET
1101: CSPFTVLPAL MNEYRVPELN VQNGVLKSLS FLFEYIGEMG KDYIYAVTPL LEDALMDRDL VHRQTAASAV KHMALGVAGL GCEDALVHLL NYIWPNIFET
1201: SPHVINAVME AIEGMRVALG AAVVLNYCLQ GLFHPARKVR EVYWKIYNSL YIGAQDALVA SYPALGDDGD NIFSRPELAM FV
0001: MADLDPEIAK TQEERRKMEA DLASLTSLTF DRDLYGGNDR ASYSTSIAPN EEDDANLDTT GSLVAQRLAS YTAPRSILND VARPHNEDDD VGFKPRQSIA
0101: EREGEYRNRR LNRVLSPDRV DAFAMGDKTP DASVRTYTDH MRETALQREK EETMRLIAKK KKEEEEAAAK HQKDSAPPPP ASSSSSSSKR RHRWDLPEED
0201: GAAAKKAKAA SSDWDLPDAA PGIGRWDAPT PGRVSDATPS AGRRNRWDET PTPGRVTDSD ATPGGGVTPG ATPSGVTWDG LATPTPKRQR SRWDETPATM
0301: GSATPMGGVT PGAAYTPGVT PIGGIDMATP TPGQLIFRGP MTPEQLNMQR WEKDIEERNR PLSDEELDAM FPKDGYKVLD PPATYVPIRT PARKLQQTPT
0401: PMATPGYVIP EENRGQQYDV PPEVPGGLPF MKPEDYQYFG SLLNEENEEE LSPEEQKERK IMKLLLKVKN GTPPQRKTAL RQLTDKAREL GAGPLFNKIL
0501: PLLMQPTLED QERHLLVKVI DRILYKLDEM VRPYVHKILV VIEPLLIDED YYARVEGREI ISNLSKAAGL ASMIAAMRPD IDNIDEYVRN TTARAFSVVA
0601: SALGIPALLP FLKAVCQSKR SWQARHTGIK IVQQIAILIG CAVLPHLRSL VEIIEHGLSD ENQKVRTITA LSLAALAEAA APYGIESFDS VLKPLWKGIR
0701: SHRGKVLAAF LKAIGFIIPL MDAIYASYYT KEVMVILIRE FQSPDEEMKK IVLKVVKQCV STEGVEPEYI RSDILPEFFR NFWTRKMALE RRNYKQLVET
0801: TVEVANKVGV ADIVGRVVED LKDESEQYRR MVMETIDKVV TNLGASDIDA RLEELLIDGI LYAFQEQTSD DANVMLNGFG AVVNALGQRV KPYLPQICGT
0901: IKWRLNNKSA KVRQQAADLI SRIAVVMKQC GEEQLMGHLG VVLYEYLGEE YPEVLGSILG ALKAIVNVIG MTKMTPPIKD LLPRLTPILK NRHEKVQENC
1001: IDLVGRIADR GAEFVPAREW MRICFELLEM LKAHKKGIRR ATVNTFGYIA KAIGPQDVLA TLLNNLKVQE RQNRVCTTVA IAIVAETCSP FTVLPALMNE
1101: YRVPELNVQN GVLKSLSFLF EYIGEMGKDY IYAVTPLLED ALMDRDLVHR QTAASAVKHM ALGVAGLGCE DALVHLLNFI WPNIFETSPH VINAVMEAIE
1201: GMRVALGAAV ILNYCLQGLF HPARKVREVY WKIYNSLYIG AQDTLVAAYP VLEDEQNNVY SRPELTMFV
0101: EREGEYRNRR LNRVLSPDRV DAFAMGDKTP DASVRTYTDH MRETALQREK EETMRLIAKK KKEEEEAAAK HQKDSAPPPP ASSSSSSSKR RHRWDLPEED
0201: GAAAKKAKAA SSDWDLPDAA PGIGRWDAPT PGRVSDATPS AGRRNRWDET PTPGRVTDSD ATPGGGVTPG ATPSGVTWDG LATPTPKRQR SRWDETPATM
0301: GSATPMGGVT PGAAYTPGVT PIGGIDMATP TPGQLIFRGP MTPEQLNMQR WEKDIEERNR PLSDEELDAM FPKDGYKVLD PPATYVPIRT PARKLQQTPT
0401: PMATPGYVIP EENRGQQYDV PPEVPGGLPF MKPEDYQYFG SLLNEENEEE LSPEEQKERK IMKLLLKVKN GTPPQRKTAL RQLTDKAREL GAGPLFNKIL
0501: PLLMQPTLED QERHLLVKVI DRILYKLDEM VRPYVHKILV VIEPLLIDED YYARVEGREI ISNLSKAAGL ASMIAAMRPD IDNIDEYVRN TTARAFSVVA
0601: SALGIPALLP FLKAVCQSKR SWQARHTGIK IVQQIAILIG CAVLPHLRSL VEIIEHGLSD ENQKVRTITA LSLAALAEAA APYGIESFDS VLKPLWKGIR
0701: SHRGKVLAAF LKAIGFIIPL MDAIYASYYT KEVMVILIRE FQSPDEEMKK IVLKVVKQCV STEGVEPEYI RSDILPEFFR NFWTRKMALE RRNYKQLVET
0801: TVEVANKVGV ADIVGRVVED LKDESEQYRR MVMETIDKVV TNLGASDIDA RLEELLIDGI LYAFQEQTSD DANVMLNGFG AVVNALGQRV KPYLPQICGT
0901: IKWRLNNKSA KVRQQAADLI SRIAVVMKQC GEEQLMGHLG VVLYEYLGEE YPEVLGSILG ALKAIVNVIG MTKMTPPIKD LLPRLTPILK NRHEKVQENC
1001: IDLVGRIADR GAEFVPAREW MRICFELLEM LKAHKKGIRR ATVNTFGYIA KAIGPQDVLA TLLNNLKVQE RQNRVCTTVA IAIVAETCSP FTVLPALMNE
1101: YRVPELNVQN GVLKSLSFLF EYIGEMGKDY IYAVTPLLED ALMDRDLVHR QTAASAVKHM ALGVAGLGCE DALVHLLNFI WPNIFETSPH VINAVMEAIE
1201: GMRVALGAAV ILNYCLQGLF HPARKVREVY WKIYNSLYIG AQDTLVAAYP VLEDEQNNVY SRPELTMFV
Arabidopsis Description
Nuclear protein-like [Source:UniProtKB/TrEMBL;Acc:Q9FMF9]
SUBAcon: [plasma membrane,nucleus,cytosol]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.