CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
peroxisome 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, peroxisome, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	peroxisome
Predotar:	secretory
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43803	Canola	nucleus	67.71	62.61
Os02t0147300-01	Rice	nucleus	23.2	40.0
CDX81218	Canola	cytosol, nucleus, plasma membrane	57.99	15.31
HORVU0Hr1G014020.1	Barley	nucleus, plastid	21.32	15.11
CDY18718	Canola	cytosol, nucleus, plasma membrane	58.31	15.07
GSMUA_Achr10P...	Banana	nucleus	34.17	14.23
TraesCS5D01G025300.1	Wheat	nucleus	42.63	11.09
TraesCS6D01G104700.1	Wheat	nucleus	41.07	10.22
TraesCS6B01G143700.1	Wheat	cytosol, nucleus, plasma membrane	41.07	10.22
TraesCS6A01G115900.1	Wheat	golgi	41.07	10.22
EES04510	Sorghum	cytosol, nucleus, plasma membrane	40.13	10.0
TraesCS5B01G017300.1	Wheat	cytosol, nucleus, plasma membrane	40.44	10.0
Zm00001d053882_P001	Maize	plastid	39.81	9.92
KXG31550	Sorghum	cytosol, nucleus, plasma membrane	39.19	9.71
Zm00001d015248_P018	Maize	cytosol, nucleus, plasma membrane	39.19	9.53
Solyc07g041790.1.1	Tomato	cytosol, nucleus	0.63	2.74
VIT_19s0015g00420.t01	Wine grape	cytosol	0.63	2.5
PGSC0003DMT400094070	Potato	mitochondrion	1.57	1.71
VIT_19s0015g00400.t01	Wine grape	cytosol	0.31	1.28
CDX84511	Canola	cytosol	2.19	1.28
CDY43804	Canola	cytosol, peroxisome, plasma membrane	2.19	0.83
PGSC0003DMT400023774	Potato	cytosol	0.63	0.66
CDX84510	Canola	nucleus, peroxisome, plasma membrane	0.0	0.0

Protein Annotations

EnsemblPlants:CDX84509	EnsemblPlantsGene:GSBRNA2T00141740001	GO:GO:0000245	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	InterPro:SF3b_su1-like	ncoils:Coil	PANTHER:PTHR12097	ProteinID:CDX84509	ProteinID:CDX84509.1
SEG:seg	SignalP:SignalP-noTM	UniParc:UPI0004EE8ADD	MapMan:35.2	:	:

Description

BnaC03g49910D

Coordinates

chrLK031837:+:1535750..1543946

Molecular Weight (calculated)

36025.0 Da

IEP (calculated)

9.503

GRAVY (calculated)

-0.879

Length

319 amino acids

Sequence
(BLAST)

001: MSSAAIVVLS LFALSRSTFS AFNRRRFSIL GCSWRKQLSF EYISIMANID PEIAKTQEER RKLEAEREGV SLTFVTLDRD LYGGNERDSY STSIAPNDEE
101: DPNLDTHGSL VAQRLASFTA PKSILNEVAR LHSEDDDDDG GFKPRQTIAE REGEYRNRRL NRVLSPDRVD PFAMGEKTPD PSVRTYNDHM RETAVQRERE
201: ETLRLIAKKK KVAEEAAKKQ KDSAHSKKRN RWEQDGGAET SSKKAKASDS VWDATPGRVS VGRRNRWDEP TPGRVTDSDA TPSGVTWDST PKGYATPTPK
301: RQRSSLLLMF PFDPLLGRL

Best Arabidopsis Sequence Match ( AT5G64270.1 )
(BLAST)

0001: MADLDPEIAK TQEERRKMEA DLASLTSLTF DRDLYGGNDR ASYSTSIAPN EEDDANLDTT GSLVAQRLAS YTAPRSILND VARPHNEDDD VGFKPRQSIA
0101: EREGEYRNRR LNRVLSPDRV DAFAMGDKTP DASVRTYTDH MRETALQREK EETMRLIAKK KKEEEEAAAK HQKDSAPPPP ASSSSSSSKR RHRWDLPEED
0201: GAAAKKAKAA SSDWDLPDAA PGIGRWDAPT PGRVSDATPS AGRRNRWDET PTPGRVTDSD ATPGGGVTPG ATPSGVTWDG LATPTPKRQR SRWDETPATM
0301: GSATPMGGVT PGAAYTPGVT PIGGIDMATP TPGQLIFRGP MTPEQLNMQR WEKDIEERNR PLSDEELDAM FPKDGYKVLD PPATYVPIRT PARKLQQTPT
0401: PMATPGYVIP EENRGQQYDV PPEVPGGLPF MKPEDYQYFG SLLNEENEEE LSPEEQKERK IMKLLLKVKN GTPPQRKTAL RQLTDKAREL GAGPLFNKIL
0501: PLLMQPTLED QERHLLVKVI DRILYKLDEM VRPYVHKILV VIEPLLIDED YYARVEGREI ISNLSKAAGL ASMIAAMRPD IDNIDEYVRN TTARAFSVVA
0601: SALGIPALLP FLKAVCQSKR SWQARHTGIK IVQQIAILIG CAVLPHLRSL VEIIEHGLSD ENQKVRTITA LSLAALAEAA APYGIESFDS VLKPLWKGIR
0701: SHRGKVLAAF LKAIGFIIPL MDAIYASYYT KEVMVILIRE FQSPDEEMKK IVLKVVKQCV STEGVEPEYI RSDILPEFFR NFWTRKMALE RRNYKQLVET
0801: TVEVANKVGV ADIVGRVVED LKDESEQYRR MVMETIDKVV TNLGASDIDA RLEELLIDGI LYAFQEQTSD DANVMLNGFG AVVNALGQRV KPYLPQICGT
0901: IKWRLNNKSA KVRQQAADLI SRIAVVMKQC GEEQLMGHLG VVLYEYLGEE YPEVLGSILG ALKAIVNVIG MTKMTPPIKD LLPRLTPILK NRHEKVQENC
1001: IDLVGRIADR GAEFVPAREW MRICFELLEM LKAHKKGIRR ATVNTFGYIA KAIGPQDVLA TLLNNLKVQE RQNRVCTTVA IAIVAETCSP FTVLPALMNE
1101: YRVPELNVQN GVLKSLSFLF EYIGEMGKDY IYAVTPLLED ALMDRDLVHR QTAASAVKHM ALGVAGLGCE DALVHLLNFI WPNIFETSPH VINAVMEAIE
1201: GMRVALGAAV ILNYCLQGLF HPARKVREVY WKIYNSLYIG AQDTLVAAYP VLEDEQNNVY SRPELTMFV

Arabidopsis Description

Nuclear protein-like [Source:UniProtKB/TrEMBL;Acc:Q9FMF9]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.