CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84509	Canola	plastid	62.61	67.71
Os02t0147300-01	Rice	nucleus	22.9	42.7
HORVU0Hr1G014020.1	Barley	nucleus, plastid	30.14	23.11
CDX81218	Canola	cytosol, nucleus, plasma membrane	71.01	20.28
CDY18718	Canola	cytosol, nucleus, plasma membrane	71.3	19.94
GSMUA_Achr10P...	Banana	nucleus	40.58	18.28
TraesCS5D01G025300.1	Wheat	nucleus	51.59	14.52
TraesCS6D01G104700.1	Wheat	nucleus	53.04	14.27
TraesCS6B01G143700.1	Wheat	cytosol, nucleus, plasma membrane	53.04	14.27
TraesCS6A01G115900.1	Wheat	golgi	53.04	14.27
EES04510	Sorghum	cytosol, nucleus, plasma membrane	52.46	14.14
Zm00001d053882_P001	Maize	plastid	52.17	14.06
Zm00001d015248_P018	Maize	cytosol, nucleus, plasma membrane	53.04	13.95
KXG31550	Sorghum	cytosol, nucleus, plasma membrane	50.43	13.52
TraesCS5B01G017300.1	Wheat	cytosol, nucleus, plasma membrane	49.86	13.33
PGSC0003DMT400094070	Potato	mitochondrion	0.87	1.03
CDX84511	Canola	cytosol	0.87	0.55
CDY43804	Canola	cytosol, peroxisome, plasma membrane	0.87	0.36
Solyc07g041790.1.1	Tomato	cytosol, nucleus	0.0	0.0
PGSC0003DMT400023774	Potato	cytosol	0.0	0.0
VIT_19s0015g00400.t01	Wine grape	cytosol	0.0	0.0
VIT_19s0015g00420.t01	Wine grape	cytosol	0.0	0.0
CDX84510	Canola	nucleus, peroxisome, plasma membrane	0.0	0.0

Protein Annotations

MapMan:35.2	UniProt:A0A078I3U7	EnsemblPlants:CDY43803	ProteinID:CDY43803	ProteinID:CDY43803.1	ncoils:Coil
GO:GO:0000245	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	EnsemblPlantsGene:GSBRNA2T00077308001
PFAM:PF08920	PANTHER:PTHR12097	InterPro:SF3b_su1	InterPro:SF3b_su1-like	UniParc:UPI0004EEC17E	SEG:seg

Description

BnaA06g23390DBnaA06g23390D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I3U7]

Coordinates

chrLK032568:+:216905..218021

Molecular Weight (calculated)

38374.2 Da

IEP (calculated)

5.590

GRAVY (calculated)

-1.052

Length

345 amino acids

Sequence
(BLAST)

001: MADIDPLIAK TQEERRRLES DLERVSLASV TLDRDLYGGN DRDSYSTSIA PYDDEDPNLD AHGSLVAQRL ASYTAPKFIL NDVARLHSED DDDGGFKPRQ
101: TIAEREGEYR NRRLNRVLSP DRVDPFAMGE KTPDPSVRTY NDHMRETAVQ REREETLRLI AKKKKEAEEV AKKQKDSAHS KKRHRWEEAE EDGGGATSSK
201: KAKASASDWD AAESTPGRVP DATPSVGRRN RWDERTPGRV TDSDATPGAT PSGVTWDATP KGSATPTPKR QRSRWDETPA NVAGVTPTAA YYTLGVTPFG
301: GIDMATPAPG PIDLRGAMTP DQYNQARWEK EIEERNKPMT LLGRL

Best Arabidopsis Sequence Match ( AT5G64270.1 )
(BLAST)

0001: MADLDPEIAK TQEERRKMEA DLASLTSLTF DRDLYGGNDR ASYSTSIAPN EEDDANLDTT GSLVAQRLAS YTAPRSILND VARPHNEDDD VGFKPRQSIA
0101: EREGEYRNRR LNRVLSPDRV DAFAMGDKTP DASVRTYTDH MRETALQREK EETMRLIAKK KKEEEEAAAK HQKDSAPPPP ASSSSSSSKR RHRWDLPEED
0201: GAAAKKAKAA SSDWDLPDAA PGIGRWDAPT PGRVSDATPS AGRRNRWDET PTPGRVTDSD ATPGGGVTPG ATPSGVTWDG LATPTPKRQR SRWDETPATM
0301: GSATPMGGVT PGAAYTPGVT PIGGIDMATP TPGQLIFRGP MTPEQLNMQR WEKDIEERNR PLSDEELDAM FPKDGYKVLD PPATYVPIRT PARKLQQTPT
0401: PMATPGYVIP EENRGQQYDV PPEVPGGLPF MKPEDYQYFG SLLNEENEEE LSPEEQKERK IMKLLLKVKN GTPPQRKTAL RQLTDKAREL GAGPLFNKIL
0501: PLLMQPTLED QERHLLVKVI DRILYKLDEM VRPYVHKILV VIEPLLIDED YYARVEGREI ISNLSKAAGL ASMIAAMRPD IDNIDEYVRN TTARAFSVVA
0601: SALGIPALLP FLKAVCQSKR SWQARHTGIK IVQQIAILIG CAVLPHLRSL VEIIEHGLSD ENQKVRTITA LSLAALAEAA APYGIESFDS VLKPLWKGIR
0701: SHRGKVLAAF LKAIGFIIPL MDAIYASYYT KEVMVILIRE FQSPDEEMKK IVLKVVKQCV STEGVEPEYI RSDILPEFFR NFWTRKMALE RRNYKQLVET
0801: TVEVANKVGV ADIVGRVVED LKDESEQYRR MVMETIDKVV TNLGASDIDA RLEELLIDGI LYAFQEQTSD DANVMLNGFG AVVNALGQRV KPYLPQICGT
0901: IKWRLNNKSA KVRQQAADLI SRIAVVMKQC GEEQLMGHLG VVLYEYLGEE YPEVLGSILG ALKAIVNVIG MTKMTPPIKD LLPRLTPILK NRHEKVQENC
1001: IDLVGRIADR GAEFVPAREW MRICFELLEM LKAHKKGIRR ATVNTFGYIA KAIGPQDVLA TLLNNLKVQE RQNRVCTTVA IAIVAETCSP FTVLPALMNE
1101: YRVPELNVQN GVLKSLSFLF EYIGEMGKDY IYAVTPLLED ALMDRDLVHR QTAASAVKHM ALGVAGLGCE DALVHLLNFI WPNIFETSPH VINAVMEAIE
1201: GMRVALGAAV ILNYCLQGLF HPARKVREVY WKIYNSLYIG AQDTLVAAYP VLEDEQNNVY SRPELTMFV

Arabidopsis Description

Nuclear protein-like [Source:UniProtKB/TrEMBL;Acc:Q9FMF9]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.