CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, plasma membrane

Predictor Summary:

nucleus 2
peroxisome 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, peroxisome, plasma membrane
Any Predictor:	nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43804	Canola	cytosol, peroxisome, plasma membrane	98.15	31.59
CDX81218	Canola	cytosol, nucleus, plasma membrane	93.33	20.86
CDY18718	Canola	cytosol, nucleus, plasma membrane	93.33	20.42
TraesCS5D01G025300.1	Wheat	nucleus	88.52	19.49
Zm00001d053882_P001	Maize	plastid	91.85	19.38
EES04510	Sorghum	cytosol, nucleus, plasma membrane	91.48	19.3
KXG31550	Sorghum	cytosol, nucleus, plasma membrane	91.11	19.11
TraesCS6A01G115900.1	Wheat	golgi	90.74	19.11
TraesCS6B01G143700.1	Wheat	cytosol, nucleus, plasma membrane	90.74	19.11
TraesCS6D01G104700.1	Wheat	nucleus	90.74	19.11
Zm00001d015248_P018	Maize	cytosol, nucleus, plasma membrane	91.48	18.83
TraesCS5B01G017300.1	Wheat	cytosol, nucleus, plasma membrane	87.78	18.37
GSMUA_Achr10P...	Banana	nucleus	41.11	14.49
HORVU0Hr1G014020.1	Barley	nucleus, plastid	17.41	10.44
VIT_19s0015g00400.t01	Wine grape	cytosol	0.0	0.0
VIT_19s0015g00420.t01	Wine grape	cytosol	0.0	0.0
PGSC0003DMT400023774	Potato	cytosol	0.0	0.0
Solyc07g041790.1.1	Tomato	cytosol, nucleus	0.0	0.0
PGSC0003DMT400094070	Potato	mitochondrion	0.0	0.0
Os02t0147300-01	Rice	nucleus	0.0	0.0
CDY43803	Canola	nucleus	0.0	0.0
CDX84511	Canola	cytosol	0.0	0.0
CDX84509	Canola	plastid	0.0	0.0

Protein Annotations

Gene3D:1.25.10.10	MapMan:35.2	InterPro:ARM-like	InterPro:ARM-type_fold	EnsemblPlants:CDX84510	ProteinID:CDX84510
ProteinID:CDX84510.1	GO:GO:0000245	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729
GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
EnsemblPlantsGene:GSBRNA2T00141741001	InterPro:IPR011989	PANTHER:PTHR12097	InterPro:SF3b_su1-like	SUPFAM:SSF48371	UniParc:UPI0004EF19FC
SEG:seg	:	:	:	:	:

Description

BnaC03g49900D

Coordinates

chrLK031837:+:1544048..1544860

Molecular Weight (calculated)

30241.0 Da

IEP (calculated)

7.061

GRAVY (calculated)

-0.038

Length

270 amino acids

Sequence
(BLAST)

001: MKPEDYQYFG ALLNEEKEEE LSPDEQKERK IMALLLKVKN GTPAQRKTAL RQLTDKAREF GAGPLFNKIL PLLMQPTLED QERHLLVKVI DRILYKLDEL
101: VRPYVHKILV VIEPLLIDDD YYARAEGREI ISNLSKAAGL ATMIAAMRPD IDNADEYVRN TTARAFAVVA SALGIPALLP FLKAVCQSKK SWQARHTGIK
201: IVQQIAILIG CAVLPHLNSL VELIEHGLSD ENLKVRTITS LSLAALAEAS TPYGIESFDS VLIPLWKGRY

Best Arabidopsis Sequence Match ( AT5G64270.1 )
(BLAST)

0001: MADLDPEIAK TQEERRKMEA DLASLTSLTF DRDLYGGNDR ASYSTSIAPN EEDDANLDTT GSLVAQRLAS YTAPRSILND VARPHNEDDD VGFKPRQSIA
0101: EREGEYRNRR LNRVLSPDRV DAFAMGDKTP DASVRTYTDH MRETALQREK EETMRLIAKK KKEEEEAAAK HQKDSAPPPP ASSSSSSSKR RHRWDLPEED
0201: GAAAKKAKAA SSDWDLPDAA PGIGRWDAPT PGRVSDATPS AGRRNRWDET PTPGRVTDSD ATPGGGVTPG ATPSGVTWDG LATPTPKRQR SRWDETPATM
0301: GSATPMGGVT PGAAYTPGVT PIGGIDMATP TPGQLIFRGP MTPEQLNMQR WEKDIEERNR PLSDEELDAM FPKDGYKVLD PPATYVPIRT PARKLQQTPT
0401: PMATPGYVIP EENRGQQYDV PPEVPGGLPF MKPEDYQYFG SLLNEENEEE LSPEEQKERK IMKLLLKVKN GTPPQRKTAL RQLTDKAREL GAGPLFNKIL
0501: PLLMQPTLED QERHLLVKVI DRILYKLDEM VRPYVHKILV VIEPLLIDED YYARVEGREI ISNLSKAAGL ASMIAAMRPD IDNIDEYVRN TTARAFSVVA
0601: SALGIPALLP FLKAVCQSKR SWQARHTGIK IVQQIAILIG CAVLPHLRSL VEIIEHGLSD ENQKVRTITA LSLAALAEAA APYGIESFDS VLKPLWKGIR
0701: SHRGKVLAAF LKAIGFIIPL MDAIYASYYT KEVMVILIRE FQSPDEEMKK IVLKVVKQCV STEGVEPEYI RSDILPEFFR NFWTRKMALE RRNYKQLVET
0801: TVEVANKVGV ADIVGRVVED LKDESEQYRR MVMETIDKVV TNLGASDIDA RLEELLIDGI LYAFQEQTSD DANVMLNGFG AVVNALGQRV KPYLPQICGT
0901: IKWRLNNKSA KVRQQAADLI SRIAVVMKQC GEEQLMGHLG VVLYEYLGEE YPEVLGSILG ALKAIVNVIG MTKMTPPIKD LLPRLTPILK NRHEKVQENC
1001: IDLVGRIADR GAEFVPAREW MRICFELLEM LKAHKKGIRR ATVNTFGYIA KAIGPQDVLA TLLNNLKVQE RQNRVCTTVA IAIVAETCSP FTVLPALMNE
1101: YRVPELNVQN GVLKSLSFLF EYIGEMGKDY IYAVTPLLED ALMDRDLVHR QTAASAVKHM ALGVAGLGCE DALVHLLNFI WPNIFETSPH VINAVMEAIE
1201: GMRVALGAAV ILNYCLQGLF HPARKVREVY WKIYNSLYIG AQDTLVAAYP VLEDEQNNVY SRPELTMFV

Arabidopsis Description

Nuclear protein-like [Source:UniProtKB/TrEMBL;Acc:Q9FMF9]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.