Factsheet for VIT_19s0015g00400.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0015g00420.t01	Wine grape	cytosol	88.46	86.25
Solyc07g041790.1.1	Tomato	cytosol, nucleus	32.05	34.25
HORVU6Hr1G065110.1	Barley	cytosol	74.36	11.18
HORVU7Hr1G022470.3	Barley	cytosol	73.08	11.15
CDX84511	Canola	cytosol	69.23	9.84
PGSC0003DMT400023774	Potato	cytosol	32.05	8.28
Os02t0478900-00	Rice	nucleus	78.21	6.58
CDY43804	Canola	cytosol, peroxisome, plasma membrane	67.95	6.32
GSMUA_Achr10P...	Banana	nucleus	57.69	5.87
VIT_08s0040g00270.t01	Wine grape	cytosol, nucleus, plasma membrane	82.05	5.04
Zm00001d053882_P001	Maize	plastid	80.77	4.92
EES04510	Sorghum	cytosol, nucleus, plasma membrane	79.49	4.84
TraesCS5D01G025300.1	Wheat	nucleus	75.64	4.81
TraesCS6A01G115900.1	Wheat	golgi	78.21	4.76
TraesCS6B01G143700.1	Wheat	cytosol, nucleus, plasma membrane	78.21	4.76
TraesCS6D01G104700.1	Wheat	nucleus	78.21	4.76
HORVU6Hr1G020850.3	Barley	cytosol, nucleus, plasma membrane	78.21	4.75
KXG31550	Sorghum	cytosol, nucleus, plasma membrane	76.92	4.66
Zm00001d015248_P018	Maize	cytosol, nucleus, plasma membrane	78.21	4.65
TraesCS5B01G017300.1	Wheat	cytosol, nucleus, plasma membrane	75.64	4.57
CDX84509	Canola	plastid	1.28	0.31
Os02t0146400-01	Rice	cytosol, nucleus	0.0	0.0
PGSC0003DMT400094070	Potato	mitochondrion	0.0	0.0
CDY43803	Canola	nucleus	0.0	0.0
CDX84510	Canola	nucleus, peroxisome, plasma membrane	0.0	0.0

Protein Annotations

MapMan:35.2	ProteinID:CCB62002	ProteinID:CCB62002.1	UniProt:F6I547	EMBL:FN596747	GO:GO:0000245
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005686	GO:GO:0005689	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0071004	GO:GO:0071013
PANTHER:PTHR12097	InterPro:SF3b_su1-like	UniParc:UPI0002109BB2	ArrayExpress:VIT_19s0015g00400	EnsemblPlantsGene:VIT_19s0015g00400	EnsemblPlants:VIT_19s0015g00400.t01

Description

No Description!

Coordinates

chr19:-:8406569..8407034

Molecular Weight (calculated)

8609.5 Da

IEP (calculated)

5.815

GRAVY (calculated)

-0.015

Length

78 amino acids

Sequence
(BLAST)

1: MALDRRNYRQ LVNTTVEIAN KVGVDGIIGR IVEDLKDGSK PSRKMVMETI EKVVANLGAS DINAHSEQLL IDGILYVL

Best Arabidopsis Sequence Match ( AT5G64270.1 )
(BLAST)

0001: MADLDPEIAK TQEERRKMEA DLASLTSLTF DRDLYGGNDR ASYSTSIAPN EEDDANLDTT GSLVAQRLAS YTAPRSILND VARPHNEDDD VGFKPRQSIA
0101: EREGEYRNRR LNRVLSPDRV DAFAMGDKTP DASVRTYTDH MRETALQREK EETMRLIAKK KKEEEEAAAK HQKDSAPPPP ASSSSSSSKR RHRWDLPEED
0201: GAAAKKAKAA SSDWDLPDAA PGIGRWDAPT PGRVSDATPS AGRRNRWDET PTPGRVTDSD ATPGGGVTPG ATPSGVTWDG LATPTPKRQR SRWDETPATM
0301: GSATPMGGVT PGAAYTPGVT PIGGIDMATP TPGQLIFRGP MTPEQLNMQR WEKDIEERNR PLSDEELDAM FPKDGYKVLD PPATYVPIRT PARKLQQTPT
0401: PMATPGYVIP EENRGQQYDV PPEVPGGLPF MKPEDYQYFG SLLNEENEEE LSPEEQKERK IMKLLLKVKN GTPPQRKTAL RQLTDKAREL GAGPLFNKIL
0501: PLLMQPTLED QERHLLVKVI DRILYKLDEM VRPYVHKILV VIEPLLIDED YYARVEGREI ISNLSKAAGL ASMIAAMRPD IDNIDEYVRN TTARAFSVVA
0601: SALGIPALLP FLKAVCQSKR SWQARHTGIK IVQQIAILIG CAVLPHLRSL VEIIEHGLSD ENQKVRTITA LSLAALAEAA APYGIESFDS VLKPLWKGIR
0701: SHRGKVLAAF LKAIGFIIPL MDAIYASYYT KEVMVILIRE FQSPDEEMKK IVLKVVKQCV STEGVEPEYI RSDILPEFFR NFWTRKMALE RRNYKQLVET
0801: TVEVANKVGV ADIVGRVVED LKDESEQYRR MVMETIDKVV TNLGASDIDA RLEELLIDGI LYAFQEQTSD DANVMLNGFG AVVNALGQRV KPYLPQICGT
0901: IKWRLNNKSA KVRQQAADLI SRIAVVMKQC GEEQLMGHLG VVLYEYLGEE YPEVLGSILG ALKAIVNVIG MTKMTPPIKD LLPRLTPILK NRHEKVQENC
1001: IDLVGRIADR GAEFVPAREW MRICFELLEM LKAHKKGIRR ATVNTFGYIA KAIGPQDVLA TLLNNLKVQE RQNRVCTTVA IAIVAETCSP FTVLPALMNE
1101: YRVPELNVQN GVLKSLSFLF EYIGEMGKDY IYAVTPLLED ALMDRDLVHR QTAASAVKHM ALGVAGLGCE DALVHLLNFI WPNIFETSPH VINAVMEAIE
1201: GMRVALGAAV ILNYCLQGLF HPARKVREVY WKIYNSLYIG AQDTLVAAYP VLEDEQNNVY SRPELTMFV

Arabidopsis Description

Nuclear protein-like [Source:UniProtKB/TrEMBL;Acc:Q9FMF9]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.