Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- plasma membrane 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES04510 | Sorghum | cytosol, nucleus, plasma membrane | 96.72 | 99.14 |
| Zm00001d053882_P001 | Maize | plastid | 96.49 | 98.91 |
| Os02t0146400-01 | Rice | cytosol, nucleus | 26.98 | 98.88 |
| TraesCS6A01G115900.1 | Wheat | golgi | 90.93 | 93.06 |
| TraesCS6D01G104700.1 | Wheat | nucleus | 90.85 | 92.98 |
| TraesCS6B01G143700.1 | Wheat | cytosol, nucleus, plasma membrane | 90.85 | 92.98 |
| HORVU6Hr1G020850.3 | Barley | cytosol, nucleus, plasma membrane | 90.7 | 92.75 |
| CDY43804 | Canola | cytosol, peroxisome, plasma membrane | 58.54 | 91.54 |
| CDX84510 | Canola | nucleus, peroxisome, plasma membrane | 18.83 | 91.48 |
| HORVU7Hr1G022470.3 | Barley | cytosol | 35.37 | 90.8 |
| CDX84511 | Canola | cytosol | 37.65 | 89.98 |
| KRH21266 | Soybean | nucleus | 78.66 | 89.82 |
| HORVU6Hr1G065110.1 | Barley | cytosol | 35.14 | 88.82 |
| Solyc07g041790.1.1 | Tomato | cytosol, nucleus | 4.88 | 87.67 |
| TraesCS5B01G017300.1 | Wheat | cytosol, nucleus, plasma membrane | 85.67 | 87.13 |
| TraesCS5D01G025300.1 | Wheat | nucleus | 81.02 | 86.7 |
| Os02t0478900-00 | Rice | nucleus | 61.05 | 86.41 |
| GSMUA_Achr10P... | Banana | nucleus | 50.0 | 85.64 |
| KRH11024 | Soybean | nucleus | 66.31 | 84.47 |
| Bra037770.1-P | Field mustard | cytosol, nucleus, plasma membrane | 79.95 | 82.73 |
| AT5G64270.1 | Thale cress | cytosol, nucleus, plasma membrane | 79.8 | 82.51 |
| PGSC0003DMT400094070 | Potato | mitochondrion | 17.84 | 80.14 |
| Bra024281.1-P | Field mustard | nucleus | 75.84 | 79.92 |
| VIT_19s0015g00400.t01 | Wine grape | cytosol | 4.65 | 78.21 |
| PGSC0003DMT400023774 | Potato | cytosol | 17.91 | 77.81 |
| VIT_19s0015g00420.t01 | Wine grape | cytosol | 4.73 | 77.5 |
| CDY43803 | Canola | nucleus | 13.95 | 53.04 |
| CDX84509 | Canola | plastid | 9.53 | 39.19 |
Protein Annotations
| Gene3D:1.25.10.10 | EntrezGene:100277544 | MapMan:16.4.1.2.4.1 | UniProt:A0A1D6H0Q8 | ProteinID:AQK68474.1 | InterPro:ARM-like |
| InterPro:ARM-type_fold | ncoils:Coil | GO:GO:0000245 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003729 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016043 | InterPro:HEAT_type_2 | InterPro:IPR011989 | InterPro:IPR021133 | PFAM:PF08920 | PFscan:PS50077 |
| PANTHER:PTHR12097 | InterPro:SF3b_su1 | InterPro:SF3b_su1-like | SMART:SM01349 | SUPFAM:SSF48371 | InterPro:TOG |
| UniParc:UPI00084482D8 | EnsemblPlantsGene:Zm00001d015248 | EnsemblPlants:Zm00001d015248_P018 | EnsemblPlants:Zm00001d015248_T018 | SEG:seg | : |
Description
Splicing factor 3B subunit 1
Coordinates
chr5:+:81113479..81118196
Molecular Weight (calculated)
145810.0 Da
IEP (calculated)
5.794
GRAVY (calculated)
-0.279
Length
1312 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDSIDADLAR TQEERRRMEE ALAAGAPMAV SSVTFDTDLY GGGGADPNRF AGYDTSIPAS EDDAAEDDAE AANPAPRRLA AYTGHAIAAA DIPRSADDDD
0101: GLPKRSQRII DREDDYRRRR LNQIISPERH DPFAAGEATP DPSVRTYADV MRDAALQKKK EDLLREIAKK KKEEEEKEKE RKAAAPEQPA ATTKRRNRWD
0201: QSQDGDAGAG AKKVKTSSDW DAPDATPGIG RWDATPGRVG DATPSVRRNR WDETPTPGRM ADADATPAAG GATPGATPSG AWDATPKLPG GVTPTPGKKQ
0301: RSRWDETPAS MGSATPGSLG AATPAGYTPG PTPFGAENLA TPTPSQIARG PITPEQYQLM RWERDIEERN RPLTDEELDA MFPQEGYKIL EPPASYQPIR
0401: TPARKLLATP TPLGTPLYAI PEENRGQHFD VPKELPGGLP LMKPEDYQYF GTLLNEEEEE QLSPEEQKER KIMKLLLKVK NGTPPQRKTA LRQLTDKARE
0501: FGAGPLFNKI LPLLMQPTLE DQERHLLVKV IDRVLYKLDE LVRPFVHKIL VVIEPLLIDE DYYARVEGRE IISNLSKAAG LATMIAAMRP DIDNIDEYVR
0601: NTTARAFSVV ASALGIPALL PFLKAVCQSK KSWQARHTGI KIVQQIAILM GCAVLPHLKS LVEIIEHGLS DENQKVRTIT ALSLAALAEA AAPYGIESFD
0701: TVLKPLWKGI RSHRGKVLAA FLKAIGFIIP LMDALYASYY TKEVMQVLIR EFQSPDEEMK KIVLKVVKQC VSTEGVEADY IRNDILPDFF KHFWVRRMAL
0801: DRRNYKQLVE TTVEMANKVG VADIVGRVVE DLKDESEPYR RMVMETIEKV VANLGASDID ARLEELLIDG ILYAFQEQTS DDANVMLNGF GAVVNALGQR
0901: VKPYLPQICG TIKWRLNNKS AKVRQQAADL ISRIAIVMKQ CQEEQLMGHL GVVLYEYLGE EYPEVLGSIL GALKAIVNVI GMTKMTPPIK DLLPRLTPIL
1001: KNRHEKVQEN CIDLVGRIAD RGAEFVPARE WMRICFELLE MLKAHKKGIR RATVNTFGYI AKAIGPQDVL ATLLNNLKVQ ERQNRVCTTV AIAIVAETCS
1101: PFTVLPALMN EYRVPELNVQ NGVLKSLSFL FEYIGEMGKD YIYAVTPLLE DALMDRDLVH RQTAASAVKH MALGVAGLGC EDALVHLLNY VWPNIFETSP
1201: HVINAVMEAI EGMRVALGAA VILNYCLQGL FHPARKVREV YWKIYNSLYI GAQDALVASY PALEDDGDNI FSRPELAMFV WIVPSEGGAM FRNFFSWFTI
1301: MQLKISIIVW SY
0101: GLPKRSQRII DREDDYRRRR LNQIISPERH DPFAAGEATP DPSVRTYADV MRDAALQKKK EDLLREIAKK KKEEEEKEKE RKAAAPEQPA ATTKRRNRWD
0201: QSQDGDAGAG AKKVKTSSDW DAPDATPGIG RWDATPGRVG DATPSVRRNR WDETPTPGRM ADADATPAAG GATPGATPSG AWDATPKLPG GVTPTPGKKQ
0301: RSRWDETPAS MGSATPGSLG AATPAGYTPG PTPFGAENLA TPTPSQIARG PITPEQYQLM RWERDIEERN RPLTDEELDA MFPQEGYKIL EPPASYQPIR
0401: TPARKLLATP TPLGTPLYAI PEENRGQHFD VPKELPGGLP LMKPEDYQYF GTLLNEEEEE QLSPEEQKER KIMKLLLKVK NGTPPQRKTA LRQLTDKARE
0501: FGAGPLFNKI LPLLMQPTLE DQERHLLVKV IDRVLYKLDE LVRPFVHKIL VVIEPLLIDE DYYARVEGRE IISNLSKAAG LATMIAAMRP DIDNIDEYVR
0601: NTTARAFSVV ASALGIPALL PFLKAVCQSK KSWQARHTGI KIVQQIAILM GCAVLPHLKS LVEIIEHGLS DENQKVRTIT ALSLAALAEA AAPYGIESFD
0701: TVLKPLWKGI RSHRGKVLAA FLKAIGFIIP LMDALYASYY TKEVMQVLIR EFQSPDEEMK KIVLKVVKQC VSTEGVEADY IRNDILPDFF KHFWVRRMAL
0801: DRRNYKQLVE TTVEMANKVG VADIVGRVVE DLKDESEPYR RMVMETIEKV VANLGASDID ARLEELLIDG ILYAFQEQTS DDANVMLNGF GAVVNALGQR
0901: VKPYLPQICG TIKWRLNNKS AKVRQQAADL ISRIAIVMKQ CQEEQLMGHL GVVLYEYLGE EYPEVLGSIL GALKAIVNVI GMTKMTPPIK DLLPRLTPIL
1001: KNRHEKVQEN CIDLVGRIAD RGAEFVPARE WMRICFELLE MLKAHKKGIR RATVNTFGYI AKAIGPQDVL ATLLNNLKVQ ERQNRVCTTV AIAIVAETCS
1101: PFTVLPALMN EYRVPELNVQ NGVLKSLSFL FEYIGEMGKD YIYAVTPLLE DALMDRDLVH RQTAASAVKH MALGVAGLGC EDALVHLLNY VWPNIFETSP
1201: HVINAVMEAI EGMRVALGAA VILNYCLQGL FHPARKVREV YWKIYNSLYI GAQDALVASY PALEDDGDNI FSRPELAMFV WIVPSEGGAM FRNFFSWFTI
1301: MQLKISIIVW SY
0001: MADLDPEIAK TQEERRKMEA DLASLTSLTF DRDLYGGNDR ASYSTSIAPN EEDDANLDTT GSLVAQRLAS YTAPRSILND VARPHNEDDD VGFKPRQSIA
0101: EREGEYRNRR LNRVLSPDRV DAFAMGDKTP DASVRTYTDH MRETALQREK EETMRLIAKK KKEEEEAAAK HQKDSAPPPP ASSSSSSSKR RHRWDLPEED
0201: GAAAKKAKAA SSDWDLPDAA PGIGRWDAPT PGRVSDATPS AGRRNRWDET PTPGRVTDSD ATPGGGVTPG ATPSGVTWDG LATPTPKRQR SRWDETPATM
0301: GSATPMGGVT PGAAYTPGVT PIGGIDMATP TPGQLIFRGP MTPEQLNMQR WEKDIEERNR PLSDEELDAM FPKDGYKVLD PPATYVPIRT PARKLQQTPT
0401: PMATPGYVIP EENRGQQYDV PPEVPGGLPF MKPEDYQYFG SLLNEENEEE LSPEEQKERK IMKLLLKVKN GTPPQRKTAL RQLTDKAREL GAGPLFNKIL
0501: PLLMQPTLED QERHLLVKVI DRILYKLDEM VRPYVHKILV VIEPLLIDED YYARVEGREI ISNLSKAAGL ASMIAAMRPD IDNIDEYVRN TTARAFSVVA
0601: SALGIPALLP FLKAVCQSKR SWQARHTGIK IVQQIAILIG CAVLPHLRSL VEIIEHGLSD ENQKVRTITA LSLAALAEAA APYGIESFDS VLKPLWKGIR
0701: SHRGKVLAAF LKAIGFIIPL MDAIYASYYT KEVMVILIRE FQSPDEEMKK IVLKVVKQCV STEGVEPEYI RSDILPEFFR NFWTRKMALE RRNYKQLVET
0801: TVEVANKVGV ADIVGRVVED LKDESEQYRR MVMETIDKVV TNLGASDIDA RLEELLIDGI LYAFQEQTSD DANVMLNGFG AVVNALGQRV KPYLPQICGT
0901: IKWRLNNKSA KVRQQAADLI SRIAVVMKQC GEEQLMGHLG VVLYEYLGEE YPEVLGSILG ALKAIVNVIG MTKMTPPIKD LLPRLTPILK NRHEKVQENC
1001: IDLVGRIADR GAEFVPAREW MRICFELLEM LKAHKKGIRR ATVNTFGYIA KAIGPQDVLA TLLNNLKVQE RQNRVCTTVA IAIVAETCSP FTVLPALMNE
1101: YRVPELNVQN GVLKSLSFLF EYIGEMGKDY IYAVTPLLED ALMDRDLVHR QTAASAVKHM ALGVAGLGCE DALVHLLNFI WPNIFETSPH VINAVMEAIE
1201: GMRVALGAAV ILNYCLQGLF HPARKVREVY WKIYNSLYIG AQDTLVAAYP VLEDEQNNVY SRPELTMFV
0101: EREGEYRNRR LNRVLSPDRV DAFAMGDKTP DASVRTYTDH MRETALQREK EETMRLIAKK KKEEEEAAAK HQKDSAPPPP ASSSSSSSKR RHRWDLPEED
0201: GAAAKKAKAA SSDWDLPDAA PGIGRWDAPT PGRVSDATPS AGRRNRWDET PTPGRVTDSD ATPGGGVTPG ATPSGVTWDG LATPTPKRQR SRWDETPATM
0301: GSATPMGGVT PGAAYTPGVT PIGGIDMATP TPGQLIFRGP MTPEQLNMQR WEKDIEERNR PLSDEELDAM FPKDGYKVLD PPATYVPIRT PARKLQQTPT
0401: PMATPGYVIP EENRGQQYDV PPEVPGGLPF MKPEDYQYFG SLLNEENEEE LSPEEQKERK IMKLLLKVKN GTPPQRKTAL RQLTDKAREL GAGPLFNKIL
0501: PLLMQPTLED QERHLLVKVI DRILYKLDEM VRPYVHKILV VIEPLLIDED YYARVEGREI ISNLSKAAGL ASMIAAMRPD IDNIDEYVRN TTARAFSVVA
0601: SALGIPALLP FLKAVCQSKR SWQARHTGIK IVQQIAILIG CAVLPHLRSL VEIIEHGLSD ENQKVRTITA LSLAALAEAA APYGIESFDS VLKPLWKGIR
0701: SHRGKVLAAF LKAIGFIIPL MDAIYASYYT KEVMVILIRE FQSPDEEMKK IVLKVVKQCV STEGVEPEYI RSDILPEFFR NFWTRKMALE RRNYKQLVET
0801: TVEVANKVGV ADIVGRVVED LKDESEQYRR MVMETIDKVV TNLGASDIDA RLEELLIDGI LYAFQEQTSD DANVMLNGFG AVVNALGQRV KPYLPQICGT
0901: IKWRLNNKSA KVRQQAADLI SRIAVVMKQC GEEQLMGHLG VVLYEYLGEE YPEVLGSILG ALKAIVNVIG MTKMTPPIKD LLPRLTPILK NRHEKVQENC
1001: IDLVGRIADR GAEFVPAREW MRICFELLEM LKAHKKGIRR ATVNTFGYIA KAIGPQDVLA TLLNNLKVQE RQNRVCTTVA IAIVAETCSP FTVLPALMNE
1101: YRVPELNVQN GVLKSLSFLF EYIGEMGKDY IYAVTPLLED ALMDRDLVHR QTAASAVKHM ALGVAGLGCE DALVHLLNFI WPNIFETSPH VINAVMEAIE
1201: GMRVALGAAV ILNYCLQGLF HPARKVREVY WKIYNSLYIG AQDTLVAAYP VLEDEQNNVY SRPELTMFV
Arabidopsis Description
Nuclear protein-like [Source:UniProtKB/TrEMBL;Acc:Q9FMF9]
SUBAcon: [plasma membrane,nucleus,cytosol]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.